Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.6e-250 868.2 424 100.0
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 8.5e-20 102.4 322 28.9
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.6e-18 97.1 373 26.5
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.7e-18 96.7 321 29.9
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 6.1e-18 96.3 312 28.5
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.9e-17 93.6 362 27.6
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 8.8e-17 92.4 376 26.3
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 8.8e-17 92.4 369 28.2
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.4e-16 90.1 376 27.4
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 9.7e-16 89.0 377 26.3
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.3e-15 88.6 365 26.8
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.2e-15 87.8 356 26.7
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.2e-15 87.8 386 26.4
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.8e-15 87.4 370 25.9
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.1e-14 85.5 335 27.8
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.1e-14 85.5 334 27.8
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.1e-14 85.5 375 26.9
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.4e-14 85.1 375 26.1
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.8e-14 84.7 385 26.5
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.1e-14 84.0 335 27.8
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 3.1e-14 84.0 379 25.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 4.1e-14 83.6 356 27.0
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 4.1e-14 83.6 406 24.6
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 5.3e-14 83.2 334 27.5
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 5.3e-14 83.2 321 27.1
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 5.3e-14 83.2 321 27.1
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 5.3e-14 83.2 363 24.2
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 5.3e-14 83.2 321 27.1
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.3e-14 83.2 353 25.8
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 7.0e-14 82.8 383 24.5
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 9.1e-14 82.4 364 26.4
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 9.1e-14 82.4 339 26.0
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 9.1e-14 82.4 352 24.4
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 9.1e-14 82.4 352 24.4
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 9.1e-14 82.4 378 27.0
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 9.1e-14 82.4 352 25.9
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.5e-13 81.6 376 25.3
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.5e-13 81.6 313 28.4
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.0e-13 81.3 442 24.9
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 2.6e-13 80.9 320 26.6
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.6e-13 80.9 334 25.7
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.6e-13 80.9 374 25.4
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 2.6e-13 80.9 362 26.2
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 3.5e-13 80.5 320 26.6
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 3.5e-13 80.5 381 24.4
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 3.5e-13 80.5 313 24.9
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 4.5e-13 80.1 328 25.0
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.5e-13 80.1 386 24.6
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 5.9e-13 79.7 392 24.2
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 7.7e-13 79.3 374 27.8
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 7.7e-13 79.3 332 25.9
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.0e-12 79.0 346 24.0
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.0e-12 79.0 382 25.4
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.0e-12 79.0 310 26.8
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.3e-12 78.6 348 26.7
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.3e-12 78.6 327 27.2
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-12 78.2 328 25.9
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.7e-12 78.2 328 25.6
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.7e-12 78.2 371 25.1
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.7e-12 78.2 383 25.3
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.7e-12 78.2 346 24.9
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.9e-12 77.4 310 26.5
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.9e-12 77.4 359 25.3
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.9e-12 77.4 303 25.4
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 3.8e-12 77.0 332 25.6
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 3.8e-12 77.0 339 25.7
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.0e-12 76.6 374 23.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 5.0e-12 76.6 347 24.8
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 6.5e-12 76.3 348 24.7
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 6.5e-12 76.3 351 27.1
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 6.5e-12 76.3 373 24.9
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 8.5e-12 75.9 359 26.2
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 8.5e-12 75.9 325 25.8
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 8.5e-12 75.9 460 22.4
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 8.5e-12 75.9 396 24.2
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 8.5e-12 75.9 438 22.4
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 8.5e-12 75.9 347 25.4
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 8.5e-12 75.9 372 24.7
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.1e-11 75.5 362 26.2
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.1e-11 75.5 454 22.5
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.1e-11 75.5 385 22.9
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.1e-11 75.5 384 26.0
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.5e-11 75.1 339 24.5
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.5e-11 75.1 362 25.1
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.5e-11 75.1 408 24.8
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.5e-11 75.1 349 25.2
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.5e-11 75.1 341 25.2
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.5e-11 75.1 385 23.1
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.9e-11 74.7 385 25.5
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.9e-11 74.7 380 24.5
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.5e-11 74.3 411 25.3
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.5e-11 74.3 393 23.7
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.2e-11 73.9 369 25.2
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 3.2e-11 73.9 374 23.5
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.5e-11 73.2 375 25.3
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.5e-11 73.2 387 23.8
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 5.5e-11 73.2 354 26.3
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 5.5e-11 73.2 373 24.7
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 7.2e-11 72.8 366 24.9
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 7.2e-11 72.8 460 21.3
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 9.4e-11 72.4 239 28.0
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-10 72.0 387 24.8
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.2e-10 72.0 389 23.7
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.2e-10 72.0 380 25.5
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.6e-10 71.6 360 26.1
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.6e-10 71.6 346 24.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.6e-10 71.6 337 24.3
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.1e-10 71.2 317 24.9
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.1e-10 71.2 380 25.5
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.7e-10 70.9 312 25.3
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.7e-10 70.9 381 26.0
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 3.6e-10 70.5 448 24.1
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 3.6e-10 70.5 319 24.5
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 3.6e-10 70.5 311 25.7
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 6.1e-10 69.7 382 23.8
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.1e-10 69.7 328 24.1
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.1e-10 69.7 328 24.1
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 8.0e-10 69.3 364 23.6
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.8e-09 68.2 336 23.8
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.3e-09 67.8 385 22.6
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 3.0e-09 67.4 319 25.4
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 3.9e-09 67.0 321 24.6
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 5.2e-09 66.6 388 25.0
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 5.2e-09 66.6 321 24.3
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 5.2e-09 66.6 368 25.3
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 8.8e-09 65.9 361 24.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.1e-08 65.5 371 25.9
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.1e-08 65.5 345 24.1
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.5e-08 65.1 319 23.8
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 2.0e-08 64.7 347 24.5
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.0e-08 64.7 345 24.3
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.0e-08 64.7 345 24.3
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.6e-08 64.3 335 24.5
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.3e-07 62.0 331 24.2
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.3e-07 62.0 368 24.2
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.3e-07 62.0 255 26.7
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.2e-07 61.2 337 24.0
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.2e-07 61.2 242 27.7
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.7e-07 60.5 269 24.9
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.7e-07 60.5 246 28.9
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 6.3e-07 59.7 324 25.9
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 8.2e-07 59.3 160 29.4
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.1e-06 58.9 239 27.6
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.8e-06 58.2 249 25.7
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.8e-06 58.2 92 37.0
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.3e-06 56.6 78 42.3
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 9.1e-06 55.8 323 24.1


User provided reference genes

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