Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 8.0e-204 713.8 424 100.0
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 1.0e-33 148.7 183 43.2
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 6.7e-33 146.0 183 42.6
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 3.3e-32 143.7 146 49.3
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 5.7e-32 142.9 195 40.5
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 2.2e-31 141.0 182 41.2
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.8e-31 140.6 184 41.3
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 6.3e-31 139.4 184 41.3
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 1.4e-30 138.3 181 42.5
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.8e-30 137.9 177 39.5
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.4e-30 137.5 182 40.1
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 3.1e-30 137.1 178 40.4
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 3.1e-30 137.1 180 41.1
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 4.1e-30 136.7 193 40.9
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 4.1e-30 136.7 170 40.6
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 4.1e-30 136.7 177 39.5
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 5.3e-30 136.3 177 39.5
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 9.0e-30 135.6 179 40.2
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.2e-29 135.2 177 39.0
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 1.5e-29 134.8 170 42.4
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 2.0e-29 134.4 167 41.3
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 2.0e-29 134.4 188 41.5
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 2.0e-29 134.4 196 37.8
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 2.0e-29 134.4 196 37.8
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 2.6e-29 134.0 159 45.3
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 2.6e-29 134.0 167 45.5
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 2.6e-29 134.0 159 44.0
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 2.6e-29 134.0 182 41.2
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 2.6e-29 134.0 168 43.5
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 4.5e-29 133.3 185 41.1
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 4.5e-29 133.3 167 40.1
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 4.5e-29 133.3 179 39.7
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 4.5e-29 133.3 174 45.4
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 5.9e-29 132.9 184 40.2
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 7.7e-29 132.5 209 37.8
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 7.7e-29 132.5 171 45.0
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 1.0e-28 132.1 145 45.5
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 1.0e-28 132.1 217 37.8
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.0e-28 132.1 185 39.5
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.3e-28 131.7 184 39.7
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.3e-28 131.7 196 38.8
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 2.2e-28 131.0 156 44.9
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 2.9e-28 130.6 184 40.2
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.8e-28 130.2 181 41.4
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.8e-28 130.2 181 41.4
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.8e-28 130.2 167 40.7
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 3.8e-28 130.2 181 41.4
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 5.0e-28 129.8 182 41.2
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 5.0e-28 129.8 181 42.0
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 6.5e-28 129.4 181 39.2
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 6.5e-28 129.4 163 43.6
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 6.5e-28 129.4 157 43.3
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 8.5e-28 129.0 197 39.6
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 8.5e-28 129.0 160 45.6
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 8.5e-28 129.0 184 39.1
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 1.1e-27 128.6 180 39.4
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 1.1e-27 128.6 167 39.5
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 1.1e-27 128.6 195 39.0
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.1e-27 128.6 181 42.0
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 1.1e-27 128.6 182 42.9
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 1.4e-27 128.3 179 39.1
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.4e-27 128.3 163 42.3
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 1.4e-27 128.3 167 40.7
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.9e-27 127.9 167 41.3
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.5e-27 127.5 181 41.4
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 2.5e-27 127.5 183 39.3
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 2.5e-27 127.5 221 38.0
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 2.5e-27 127.5 180 40.0
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.5e-27 127.5 180 40.6
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 2.5e-27 127.5 182 41.8
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 3.2e-27 127.1 179 41.3
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 3.2e-27 127.1 184 40.2
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 3.2e-27 127.1 216 36.1
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.2e-27 127.1 181 39.8
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 3.2e-27 127.1 184 38.6
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 3.2e-27 127.1 184 38.0
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 3.2e-27 127.1 221 37.6
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 3.2e-27 127.1 165 40.6
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 3.2e-27 127.1 157 44.6
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 4.2e-27 126.7 181 38.1
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 4.2e-27 126.7 181 38.1
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 4.2e-27 126.7 216 36.1
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 4.2e-27 126.7 216 36.1
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 4.2e-27 126.7 201 38.8
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.5e-27 126.3 159 42.1
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 5.5e-27 126.3 184 37.5
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 5.5e-27 126.3 181 39.2
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 1.2e-26 125.2 212 35.4
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 1.2e-26 125.2 183 38.8
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.2e-26 125.2 199 38.7
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.2e-26 125.2 182 37.9
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.6e-26 124.8 170 41.8
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 1.6e-26 124.8 216 35.6
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 1.6e-26 124.8 216 35.6
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.6e-26 124.8 214 38.3
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.1e-26 124.4 184 38.6
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 2.7e-26 124.0 208 35.1
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 2.7e-26 124.0 208 35.6
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 2.7e-26 124.0 184 37.5
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.7e-26 124.0 159 40.9
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 3.6e-26 123.6 184 37.0
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 3.6e-26 123.6 181 39.2
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 3.6e-26 123.6 166 40.4
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 4.6e-26 123.2 210 37.1
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 4.6e-26 123.2 169 40.8
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 4.6e-26 123.2 162 40.7
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 4.6e-26 123.2 184 34.8
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 7.9e-26 122.5 162 39.5
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.0e-25 122.1 216 34.7
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.0e-25 122.1 159 41.5
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.0e-25 122.1 181 38.7
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 2.3e-25 120.9 209 34.0
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.0e-25 120.6 181 39.2
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 3.0e-25 120.6 194 36.6
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 3.9e-25 120.2 194 37.1
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 3.9e-25 120.2 211 34.1
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 5.1e-25 119.8 209 35.9
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 5.1e-25 119.8 150 43.3
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 6.7e-25 119.4 185 38.9
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 8.8e-25 119.0 158 44.9
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.5e-24 118.2 167 42.5
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 3.3e-24 117.1 209 34.9
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 5.7e-24 116.3 176 37.5
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 5.7e-24 116.3 211 33.2
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 7.4e-24 115.9 206 35.4
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.7e-23 114.8 225 32.0
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 3.7e-23 113.6 105 51.4
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 4.8e-23 113.2 184 37.5
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 8.2e-23 112.5 267 33.7
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 4.1e-22 110.2 118 46.6
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 5.3e-22 109.8 180 36.1
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 2.6e-21 107.5 148 39.9
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.3e-20 105.1 290 30.7
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.3e-20 105.1 290 30.7
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 7.2e-19 99.4 190 34.7
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.2e-18 98.6 113 43.4
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 2.7e-18 97.4 142 39.4
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 3.6e-18 97.1 146 39.0
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 3.6e-18 97.1 142 38.7
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 6.1e-18 96.3 141 42.6
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 1.4e-14 85.1 178 32.6
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 7.0e-14 82.8 149 36.2
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 4.2e-11 73.6 126 34.1
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 3.3e-08 63.9 65 44.6
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 9.7e-08 62.4 49 55.1
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 6.3e-07 59.7 49 51.0
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 8.2e-07 59.3 47 53.2
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.4e-06 58.5 50 50.0
Os04g0682400 Oryza sativa ssp. japonica HOM05D000428 ORTHO05D001253 1.8e-06 58.2 127 29.9
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 2.4e-06 57.8 174 27.0
FAN03G1299 Fragaria x ananassa HOM05D003145 ORTHO05D003586 4.1e-06 57.0 131 29.8
FAN03G2189 Fragaria x ananassa HOM05D003145 ORTHO05D003586 4.1e-06 57.0 131 29.8
FAN10G0791 Fragaria x ananassa HOM05D003145 ORTHO05D003586 4.1e-06 57.0 131 29.8
FvH4_7g27230 Fragaria vesca HOM05D003145 ORTHO05D003586 5.3e-06 56.6 131 29.8
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 7.0e-06 56.2 48 50.0
FAN06G1760 Fragaria x ananassa HOM05D003145 ORTHO05D003586 7.0e-06 56.2 131 29.8
FAN06G4546 Fragaria x ananassa HOM05D003145 ORTHO05D003586 7.0e-06 56.2 131 29.8


User provided reference genes

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