Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 5.1e-279 963.8 489 100.0
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 2.0e-49 201.1 387 35.9
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 4.5e-49 199.9 386 36.0
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 1.0e-48 198.7 386 35.0
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 1.0e-48 198.7 386 35.0
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 1.7e-48 198.0 382 36.4
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 1.7e-48 198.0 430 34.4
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 2.2e-48 197.6 424 34.2
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 2.2e-48 197.6 390 35.9
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.8e-48 196.8 386 36.3
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 3.8e-48 196.8 471 33.5
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 5.0e-48 196.4 386 35.8
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 1.1e-47 195.3 387 35.1
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.1e-47 195.3 386 36.3
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.1e-47 195.3 386 36.0
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 1.1e-47 195.3 477 32.1
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 1.1e-47 195.3 386 35.8
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 1.9e-47 194.5 386 35.0
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 1.9e-47 194.5 386 36.0
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.9e-47 194.5 386 36.0
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 1.9e-47 194.5 425 34.4
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 2.5e-47 194.1 387 35.1
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 3.2e-47 193.7 430 33.0
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 3.2e-47 193.7 386 35.8
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 3.2e-47 193.7 387 34.9
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 4.2e-47 193.4 429 33.1
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 4.2e-47 193.4 425 32.9
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 7.2e-47 192.6 387 35.1
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 9.4e-47 192.2 381 34.9
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 9.4e-47 192.2 381 34.9
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 9.4e-47 192.2 444 34.0
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 9.4e-47 192.2 387 35.1
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 1.2e-46 191.8 386 35.2
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 1.6e-46 191.4 387 34.4
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 2.1e-46 191.0 392 34.7
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 2.1e-46 191.0 430 34.0
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 2.7e-46 190.7 425 33.4
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 2.7e-46 190.7 387 35.1
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 2.7e-46 190.7 387 35.1
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 3.6e-46 190.3 425 33.6
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 3.6e-46 190.3 468 33.3
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 3.6e-46 190.3 425 34.4
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 4.7e-46 189.9 386 36.3
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 4.7e-46 189.9 451 33.5
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 4.7e-46 189.9 425 33.2
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 4.7e-46 189.9 384 35.4
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 4.7e-46 189.9 391 34.8
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 6.1e-46 189.5 423 33.3
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 6.1e-46 189.5 434 33.4
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 6.1e-46 189.5 360 36.1
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 6.1e-46 189.5 384 35.2
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 6.1e-46 189.5 423 33.6
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 7.9e-46 189.1 425 34.1
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 7.9e-46 189.1 425 34.1
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 7.9e-46 189.1 388 35.8
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 7.9e-46 189.1 386 35.2
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 7.9e-46 189.1 386 35.0
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 7.9e-46 189.1 384 35.4
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 7.9e-46 189.1 424 33.0
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.0e-45 188.7 388 35.8
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 1.0e-45 188.7 384 34.9
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.0e-45 188.7 384 34.9
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 1.0e-45 188.7 392 33.9
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 1.0e-45 188.7 385 34.8
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 1.4e-45 188.3 384 34.9
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 1.4e-45 188.3 386 35.2
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 1.4e-45 188.3 451 32.8
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.4e-45 188.3 451 32.8
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 1.4e-45 188.3 387 34.4
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 1.8e-45 188.0 451 31.7
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 1.8e-45 188.0 425 33.9
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 1.8e-45 188.0 426 32.6
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 1.8e-45 188.0 386 35.0
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.8e-45 188.0 387 35.4
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 1.8e-45 188.0 387 34.9
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 2.3e-45 187.6 425 33.9
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 2.3e-45 187.6 424 34.9
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 2.3e-45 187.6 386 35.2
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 2.3e-45 187.6 386 34.5
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 3.0e-45 187.2 359 36.8
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 3.0e-45 187.2 425 33.9
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 3.0e-45 187.2 425 33.9
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 3.0e-45 187.2 425 34.1
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 3.0e-45 187.2 386 35.5
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 3.0e-45 187.2 425 33.6
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 3.9e-45 186.8 425 34.1
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 3.9e-45 186.8 425 34.1
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 3.9e-45 186.8 425 32.2
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 3.9e-45 186.8 385 34.5
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 3.9e-45 186.8 462 33.1
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 3.9e-45 186.8 386 35.5
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 5.2e-45 186.4 451 31.5
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 5.2e-45 186.4 385 34.3
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 5.2e-45 186.4 386 33.4
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 5.2e-45 186.4 387 35.1
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 6.7e-45 186.0 387 34.1
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 6.7e-45 186.0 387 34.1
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 6.7e-45 186.0 388 35.1
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 6.7e-45 186.0 424 33.3
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 8.8e-45 185.7 386 33.9
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 1.5e-44 184.9 456 34.2
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 2.0e-44 184.5 425 32.9
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 2.0e-44 184.5 423 33.3
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 4.4e-44 183.3 384 34.1
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 1.3e-43 181.8 385 34.3
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 2.2e-43 181.0 363 34.7
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 2.2e-43 181.0 358 34.9
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 4.8e-43 179.9 422 33.9
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 4.8e-43 179.9 386 33.7
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.4e-42 178.3 404 33.9
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 7.0e-42 176.0 385 34.5
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 2.6e-41 174.1 349 34.4
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 5.9e-41 172.9 431 32.0
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 3.8e-40 170.2 404 31.7
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 5.0e-40 169.9 360 34.4
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 1.5e-39 168.3 356 35.4
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 4.2e-39 166.8 356 35.1
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 5.5e-39 166.4 359 34.0
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 8.0e-38 162.5 423 31.4
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 8.0e-38 162.5 430 30.9
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 4.4e-36 156.8 268 39.2
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 7.5e-36 156.0 387 30.7
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 3.7e-35 153.7 386 32.4
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 8.2e-35 152.5 425 30.8
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 1.1e-34 152.1 317 34.7
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.4e-34 151.8 335 32.2
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 1.7e-32 144.8 278 36.7
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.8e-32 143.7 340 33.2
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 5.0e-32 143.3 264 37.1
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.1e-23 115.5 378 29.4
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.5e-20 105.1 181 38.7
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 6.3e-19 99.8 185 35.1
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.1e-18 99.0 438 24.7
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 9.5e-15 85.9 177 34.5
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 6.1e-14 83.2 309 27.2
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 3.7e-11 73.9 226 29.2


User provided reference genes

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