Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 5.3e-123 444.9 321 100.0
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 1.3e-110 403.7 321 93.8
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 6.5e-73 278.5 342 69.6
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 8.9e-62 241.5 335 60.0
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 6.1e-55 218.8 337 56.4
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 1.4e-54 217.6 328 54.0
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 8.9e-54 214.9 335 58.2
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 2.9e-52 209.9 328 57.6
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 9.2e-51 204.9 328 48.5
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 2.1e-47 193.7 326 49.1
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 7.5e-45 185.3 334 57.5
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 1.0e-41 174.9 321 41.4
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 5.1e-41 172.6 335 54.6
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 2.5e-40 170.2 336 52.1
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 4.3e-40 169.5 335 51.3
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 9.5e-40 168.3 334 51.2
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 8.1e-39 165.2 243 53.9
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.1e-38 164.9 332 48.2
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 1.8e-38 164.1 243 53.9
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 4.4e-37 159.5 320 36.6
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 7.6e-37 158.7 298 58.1
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 3.7e-36 156.4 371 43.9
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 4.9e-36 156.0 327 52.3
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 6.4e-36 155.6 306 54.6
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 8.3e-36 155.2 334 45.8
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 2.3e-33 147.1 374 35.6
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 1.1e-32 144.8 335 46.9
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 9.6e-32 141.7 327 37.6
Ciclev10032336m.g Citrus clementina HOM05D006785 ORTHO05D006259 1.6e-31 141.0 326 48.8
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 3.6e-31 139.8 362 34.8
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 3.6e-31 139.8 362 34.8
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 3.6e-31 139.8 337 51.9
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 1.5e-29 134.4 317 36.9
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 2.6e-29 133.7 337 49.6
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 4.4e-29 132.9 342 35.1
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 1.3e-28 131.3 300 48.7
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 2.2e-28 130.6 341 33.1
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 4.9e-28 129.4 300 51.0
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 1.2e-26 124.8 336 50.3
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 2.7e-26 123.6 331 40.8
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 1.0e-25 121.7 338 45.0
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 6.6e-25 119.0 334 38.0
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 1.1e-24 118.2 304 48.7
Psat2g015800 Pisum sativum HOM05D006785 ORTHO05D006259 9.0e-22 108.6 296 50.3
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.0e-21 107.5 333 39.0
Nn3g20927 Nelumbo nucifera HOM05D006785 ORTHO05D006259 9.9e-21 105.1 371 31.0
Rhsim06G0116700 Rhododendron simsii HOM05D006785 ORTHO05D006259 1.3e-20 104.8 340 33.5
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.7e-20 104.4 314 38.9
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 2.2e-20 104.0 314 37.9
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 6.4e-20 102.4 342 40.4
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 1.4e-19 101.3 313 42.2
Lalb_Chr05g0211951 Lupinus albus HOM05D006785 ORTHO05D006259 2.7e-18 97.1 133 44.4
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 2.7e-18 97.1 329 36.2
Glyma.14G027900 Glycine max HOM05D006785 ORTHO05D006259 3.5e-18 96.7 335 41.5
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 4.6e-18 96.3 330 43.0
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 1.7e-17 94.4 136 46.3
Sabra02G0048700 Salix brachista HOM05D006785 ORTHO05D006259 1.7e-17 94.4 329 49.8
Lj1P620T12 Lonicera japonica HOM05D006785 ORTHO05D006259 8.7e-17 92.0 268 29.9
TAR627G0640 Trochodendron aralioides HOM05D006785 ORTHO05D006259 1.1e-16 91.7 258 38.0
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 4.3e-16 89.7 340 35.9
MBI10_g42732_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 7.3e-16 89.0 137 46.0
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 3.6e-15 86.7 339 40.1
Actinidia11204 Actinidia chinensis HOM05D006785 ORTHO05D006259 4.8e-15 86.3 144 40.3
Duzib147G0591 Durio zibethinus HOM05D006785 ORTHO05D006259 8.1e-15 85.5 334 44.9
arahy.Tifrunner.gnm1.ann1.SE4LXZ Arachis hypogaea HOM05D006785 ORTHO05D006259 1.8e-14 84.3 239 41.0
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 2.4e-14 84.0 326 31.6
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 3.1e-14 83.6 236 44.1
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 4.0e-14 83.2 236 30.9
Aa31LG5G5980 Aethionema arabicum HOM05D006785 ORTHO05D006259 5.3e-14 82.8 298 40.3
Peaxi162Scf00035g00291 Petunia axillaris HOM05D009485 ORTHO05D006259 6.9e-14 82.4 322 36.3
Potri.002G060200 Populus trichocarpa HOM05D006785 ORTHO05D006259 6.9e-14 82.4 137 60.6
BcaB02g06783 Brassica carinata HOM05D006785 ORTHO05D006259 2.6e-13 80.5 239 46.0
DCAR_013314 Daucus carota HOM05D006785 ORTHO05D006259 2.6e-13 80.5 355 26.5
TAR629G3165 Trochodendron aralioides HOM05D006785 ORTHO05D006259 9.9e-13 78.6 136 40.4
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 1.3e-12 78.2 234 29.9
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 6.4e-12 75.9 342 26.6
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 8.4e-12 75.5 146 39.7
Hma1.2p1_0960F.1_g241635 Hydrangea macrophylla HOM05D006785 ORTHO05D006259 1.1e-11 75.1 358 28.5
Aa31LG1G7630 Aethionema arabicum HOM05D006785 ORTHO05D006259 3.2e-11 73.6 136 44.1
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 3.2e-11 73.6 234 29.1
Oeu036701.1 Olea europaea HOM05D006851 ORTHO05D008844 4.2e-11 73.2 323 33.4
Sopen10g003690 Solanum pennellii HOM05D009485 ORTHO05D006259 5.4e-11 72.8 321 28.0
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.2e-10 71.6 106 40.6
A07p24380 Brassica napus HOM05D006785 ORTHO05D006259 1.6e-10 71.2 237 42.6
Duzib187G1417 Durio zibethinus HOM05D006785 ORTHO05D006259 1.6e-10 71.2 329 47.1
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 1.6e-10 71.2 318 32.4
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.7e-10 70.5 175 40.6
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 3.5e-10 70.1 175 41.1
BcaB02g07495 Brassica carinata HOM05D006785 ORTHO05D006259 7.9e-10 68.9 335 34.6
TAR622G1344 Trochodendron aralioides HOM05D006785 ORTHO05D006259 7.9e-10 68.9 98 42.9
PSO541G2000 Papaver somniferum HOM05D006785 ORTHO05D006259 1.0e-09 68.6 135 38.5
PSO675G6378 Papaver somniferum HOM05D006785 ORTHO05D006259 1.0e-09 68.6 135 38.5
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 1.3e-09 68.2 235 38.7
HanXRQChr08g0227971 Helianthus annuus HOM05D009485 ORTHO05D006259 3.0e-09 67.0 136 35.3
Peaxi162Scf00111g00008 Petunia axillaris HOM05D009485 ORTHO05D006259 3.9e-09 66.6 283 33.9
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 3.9e-09 66.6 160 45.0
Migut.M00503 Erythranthe guttata HOM05D009485 ORTHO05D006259 5.1e-09 66.2 322 26.4
BcaC08g44946 Brassica carinata HOM05D006785 ORTHO05D023842 6.7e-09 65.9 200 52.5
ECA233G1175 Erigeron canadensis HOM05D009485 ORTHO05D006259 6.7e-09 65.9 136 35.3
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 8.7e-09 65.5 211 31.3
Ca_25754_v3 Cicer arietinum L. HOM05D021759 ORTHO05D020454 1.1e-08 65.1 145 33.1
Cc05_g09420 Coffea canephora HOM05D009485 ORTHO05D006259 1.5e-08 64.7 340 30.3
Lsat_1_v5_gn_6_18081 Lactuca sativa HOM05D009485 ORTHO05D006259 3.3e-08 63.5 354 32.2
Nitab4.5_0002027g0170 Nicotiana tabacum HOM05D009485 ORTHO05D006259 3.3e-08 63.5 320 31.6
CAN.G585.40 Capsicum annuum HOM05D009485 ORTHO05D006259 5.6e-08 62.8 135 36.3
Nitab4.5_0001402g0020 Nicotiana tabacum HOM05D009485 ORTHO05D006259 9.6e-08 62.0 136 49.3
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 1.3e-07 61.6 322 34.5
MSTRG.6747 Avicennia marina HOM05D009485 ORTHO05D006259 1.4e-06 58.2 137 40.9
Gohir.D11G228900 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.4e-06 57.4 132 35.6
arahy.Tifrunner.gnm1.ann1.34NIEK Arachis hypogaea HOM05D043406 ORTHO05D031604 4.0e-06 56.6 142 33.8
Solyc07g056370.3 Solanum lycopersicum HOM05D009485 ORTHO05D006259 5.3e-06 56.2 136 44.9
Sp5g04020 Schrenkiella parvula HOM05D006785 ORTHO05D006259 6.9e-06 55.8 132 37.1


User provided reference genes

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