Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021340 Carpinus fangiana HOM05D007194 ORTHO05D009182 5.9e-138 494.2 251 100.0
CANSAT16G0047 Cannabis sativa HOM05D007194 ORTHO05D009182 2.0e-130 469.2 251 96.0
RcHm_v2.0_MTg0498961 Rosa chinensis HOM05D007194 ORTHO05D009182 3.5e-130 468.4 251 95.6
Gorai.001G165900 Gossypium raimondii HOM05D007194 ORTHO05D009182 2.5e-128 462.2 251 94.0
A04p09540 Brassica napus HOM05D007194 ORTHO05D009182 1.4e-126 456.4 251 93.6
BolSC28t60320H Brassica oleracea HOM05D007194 ORTHO05D009182 1.4e-126 456.4 251 93.6
BraSC48t46300Z Brassica rapa HOM05D007194 ORTHO05D009182 1.4e-126 456.4 251 93.6
DCAR_032453 Daucus carota HOM05D007194 ORTHO05D009182 3.1e-126 455.3 251 93.6
AT2G07771 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 4.0e-126 454.9 243 95.5
ATMG00900 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 4.0e-126 454.9 243 95.5
CAN.G1690.2 Capsicum annuum HOM05D007194 ORTHO05D009182 5.2e-126 454.5 251 92.8
Sp3g25540 Schrenkiella parvula HOM05D007194 ORTHO05D009182 1.2e-125 453.4 251 93.2
CARHR283160 Cardamine hirsuta HOM05D007194 ORTHO05D009182 2.6e-125 452.2 243 94.7
Aa31csc239G110 Aethionema arabicum HOM05D007194 ORTHO05D009182 3.2e-123 445.3 243 93.4
LjContig00315g0023372 Lotus japonicus HOM05D007194 ORTHO05D009182 1.3e-121 439.9 240 94.2
Lalb_Chr00c24g0406951 Lupinus albus HOM05D007194 ORTHO05D009182 3.0e-121 438.7 245 91.8
HanXRQChr16g0504451 Helianthus annuus HOM05D007194 ORTHO05D009182 5.0e-121 438.0 243 92.6
HanXRQMTg0579111 Helianthus annuus HOM05D007194 ORTHO05D009182 5.0e-121 438.0 243 92.6
arahy.Tifrunner.gnm1.ann1.14Z8E4 Arachis hypogaea HOM05D007194 ORTHO05D009182 6.6e-121 437.6 240 93.8
arahy.Tifrunner.gnm1.ann1.F9VS0T Arachis hypogaea HOM05D007194 ORTHO05D009182 6.6e-121 437.6 240 93.8
arahy.Tifrunner.gnm1.ann1.SBV1ZL Arachis hypogaea HOM05D007194 ORTHO05D009182 6.6e-121 437.6 240 93.8
AL3G44600 Arabidopsis lyrata HOM05D007194 ORTHO05D009182 2.5e-120 435.6 232 95.3
Sed0021793 Sechium edule HOM05D007194 ORTHO05D009182 3.3e-120 435.3 232 96.1
Lalb_Chr17g0337381 Lupinus albus HOM05D007194 ORTHO05D009182 4.3e-120 434.9 245 90.6
CAN.G85.20 Capsicum annuum HOM05D007194 ORTHO05D009182 8.0e-119 430.6 251 89.2
Lsat_1_v5_gn_7_100841 Lactuca sativa HOM05D007194 ORTHO05D009182 1.1e-118 430.3 239 92.1
Lsat_1_v5_gn_7_99901 Lactuca sativa HOM05D007194 ORTHO05D009182 1.1e-118 430.3 239 92.1
Solyc00g500242.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 1.7e-116 422.9 243 90.1
Solyc00g500277.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 1.7e-116 422.9 243 90.1
SGA_v2.0_scaffold400G50840 Striga asiatica HOM05D007194 ORTHO05D009182 1.4e-115 419.9 256 86.7
Aqoxy3G01137 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 1.6e-114 416.4 240 90.8
EL10Ac7g17455 Beta vulgaris HOM05D007194 ORTHO05D009182 7.8e-114 414.1 235 90.2
SHI36846 Sapria himalayana HOM05D007194 ORTHO05D009182 1.3e-113 413.3 244 88.1
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.0e-113 412.1 222 93.7
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.0e-113 412.1 222 93.7
Psat0s922g0240 Pisum sativum HOM05D007194 ORTHO05D009182 3.9e-113 411.8 228 93.0
Lj2P1233T109 Lonicera japonica HOM05D007194 ORTHO05D009182 5.1e-113 411.4 219 95.4
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.3e-112 408.3 233 89.3
Dinv06723 Davidia involucrata HOM05D007194 ORTHO05D009182 5.6e-112 407.9 220 94.5
Nn1g09980 Nelumbo nucifera HOM05D007194 ORTHO05D009182 1.6e-106 389.8 213 93.9
arahy.Tifrunner.gnm1.ann1.GM5VKV Arachis hypogaea HOM05D007194 ORTHO05D009182 4.6e-106 388.3 229 88.6
BolSC28t60390H Brassica oleracea HOM05D007194 ORTHO05D009182 1.2e-103 380.2 203 95.1
SHI36965 Sapria himalayana HOM05D007194 ORTHO05D009182 1.2e-103 380.2 221 87.8
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.6e-103 379.8 228 87.7
Lsat_1_v5_gn_1_67041 Lactuca sativa HOM05D007194 ORTHO05D009182 8.1e-103 377.5 213 89.7
TPR.G39619 Trifolium pratense HOM05D007194 ORTHO05D009182 5.8e-101 371.3 203 93.1
BraSC48t46335Z Brassica rapa HOM05D007194 ORTHO05D009182 2.4e-99 365.9 192 95.8
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 2.5e-96 355.9 198 91.9
Lsat_1_v5_gn_6_37840 Lactuca sativa HOM05D007194 ORTHO05D009182 5.6e-96 354.8 206 87.4
Prupe.1G175300 Prunus persica HOM05D007194 ORTHO05D009182 2.1e-95 352.8 220 84.5
BolSC28t60422H Brassica oleracea HOM05D007194 ORTHO05D009182 1.2e-93 347.1 192 93.2
Lj5P380T4 Lonicera japonica HOM05D007194 ORTHO05D009182 5.8e-93 344.7 230 80.0
Lsat_1_v5_gn_4_20401 Lactuca sativa HOM05D007194 ORTHO05D009182 7.6e-93 344.4 201 87.1
Eucgr.I01863 Eucalyptus grandis HOM05D007194 ORTHO05D009182 4.9e-92 341.7 251 74.5
TWI15G0311 Tripterygium wilfordii HOM05D007194 ORTHO05D009182 2.5e-88 329.3 174 94.3
SalBow1G0339 Salvia bowleyana HOM05D007194 ORTHO05D009182 2.1e-87 326.2 173 96.0
Sed0000988 Sechium edule HOM05D007194 ORTHO05D009182 3.6e-87 325.5 170 95.9
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.2e-87 324.7 203 82.3
Sopen00g002730 Solanum pennellii HOM05D007194 ORTHO05D009182 4.5e-85 318.5 177 89.8
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 7.6e-85 317.8 208 79.8
Lj2P1235T102 Lonicera japonica HOM05D007194 ORTHO05D009182 9.9e-85 317.4 175 91.4
Lsat_1_v5_gn_5_17681 Lactuca sativa HOM05D007194 ORTHO05D009182 3.3e-80 302.4 189 85.2
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.4e-78 296.2 208 76.9
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.3e-78 295.0 209 77.5
ECA039G0021 Erigeron canadensis HOM05D007194 ORTHO05D009182 1.9e-75 286.6 156 91.0
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 9.3e-67 257.7 212 67.5
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.6e-66 256.9 133 95.5
EL10Ac8g19071 Beta vulgaris HOM05D007194 ORTHO05D009182 1.0e-60 237.7 139 86.3
HanXRQChr05g0135281 Helianthus annuus HOM05D007194 ORTHO05D009182 1.4e-59 233.8 129 93.0
QL93p0053_0961 Quercus lobata HOM05D007194 ORTHO05D009182 7.9e-58 228.0 112 97.3
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.4e-57 227.3 130 88.5
TAR625G1253 Trochodendron aralioides HOM05D007194 ORTHO05D009182 5.7e-56 221.9 124 91.9
arahy.Tifrunner.gnm1.ann1.6A3TYM Arachis hypogaea HOM05D007194 ORTHO05D009182 1.3e-47 194.1 144 72.9
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 3.7e-47 192.6 109 89.0
CAN.G1542.2 Capsicum annuum HOM05D007194 ORTHO05D009182 3.1e-46 189.5 118 80.5
CAN.G889.9 Capsicum annuum HOM05D007194 ORTHO05D009182 5.9e-45 185.3 107 88.8
unitig_87.g27964 Utricularia gibba HOM05D007194 ORTHO05D009182 1.7e-44 183.7 105 91.4
Lj1P486T6 Lonicera japonica HOM05D007194 ORTHO05D009182 4.2e-43 179.1 108 84.3
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 4.7e-42 175.6 100 85.0
Gohir.A08G085962 Gossypium hirsutum HOM05D007194 ORTHO05D009182 6.1e-42 175.3 176 60.2
ATR0693G113 Amborella trichopoda HOM05D007194 ORTHO05D009182 3.0e-41 172.9 98 87.8
BraSC48t46286Z Brassica rapa HOM05D007194 ORTHO05D009182 2.0e-40 170.2 99 90.9
SHI26663 Sapria himalayana HOM05D007194 ORTHO05D009182 5.9e-37 158.7 101 83.2
ClCG10G007880 Citrullus lanatus HOM05D007194 ORTHO05D009182 1.0e-36 157.9 96 87.5
CAN.G1134.4 Capsicum annuum HOM05D007194 ORTHO05D009182 5.0e-36 155.6 110 74.5
Glyma.19G075000 Glycine max HOM05D007194 ORTHO05D009182 2.7e-34 149.8 73 97.3
CAN.G1001.43 Capsicum annuum HOM05D000927 ORTHO05D000850 6.1e-34 148.7 77 90.9
CAN.G122.10 Capsicum annuum HOM05D007194 ORTHO05D009182 2.3e-33 146.7 92 80.4
Haze_27474 Corylus avellana HOM05D007194 ORTHO05D009182 5.7e-32 142.1 200 40.0
Gohir.A02G088502 Gossypium hirsutum HOM05D007194 ORTHO05D009182 6.3e-31 138.7 79 84.8
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 1.4e-30 137.5 72 88.9
CAN.G78.2 Capsicum annuum HOM05D007194 ORTHO05D009182 4.1e-30 136.0 68 94.1
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 2.1e-26 123.6 79 78.5
Manes.06G014501 Manihot esculenta HOM05D007194 ORTHO05D009182 2.3e-25 120.2 65 87.7
Peaxi162Scf00174g01622 Petunia axillaris HOM05D000219 ORTHO05D000226 4.0e-25 119.4 60 95.0
Solyc12g035840.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 9.8e-24 114.8 69 82.6
Nitab4.5_0000859g0090 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.8e-23 113.2 90 72.2
BraSC54t46378Z Brassica rapa HOM05D007194 ORTHO05D009182 5.0e-20 102.4 59 89.8
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.0e-17 93.2 54 85.2
SHI24634 Sapria himalayana HOM05D007194 ORTHO05D009182 4.0e-17 92.8 147 44.2
CAN.G380.6 Capsicum annuum HOM05D007194 ORTHO05D009182 2.4e-14 83.6 55 76.4
SHI21961 Sapria himalayana HOM05D007194 ORTHO05D009182 7.0e-14 82.0 53 83.0
SHI49604 Sapria himalayana HOM05D007194 ORTHO05D009182 4.7e-10 69.3 37 94.6
Aqoxy4G01620 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 3.1e-09 66.6 42 83.3
Dinv00475 Davidia involucrata HOM05D007194 ORTHO05D009182 1.2e-08 64.7 35 91.4
Phvul.007G104600 Phaseolus vulgaris HOM05D007194 ORTHO05D009182 1.5e-08 64.3 46 73.9
PGSC0003DMG400042571 Solanum tuberosum HOM05D007194 ORTHO05D009182 3.4e-08 63.2 44 75.0
SHI24632 Sapria himalayana HOM05D007194 ORTHO05D009182 9.2e-06 55.1 129 34.9


User provided reference genes

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