Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021328 Carpinus fangiana HOM05D000276 ORTHO05D126103 7.6e-249 863.6 516 100.0
Cfa006746 Carpinus fangiana HOM05D000276 ORTHO05D124374 9.0e-133 478.0 493 63.9
Cfa007057 Carpinus fangiana HOM05D000276 ORTHO05D122355 2.9e-38 164.1 537 36.1
Cfa006745 Carpinus fangiana HOM05D000276 ORTHO05D124495 1.1e-37 162.2 481 36.4
Ciclev10026339m.g Citrus clementina HOM05D000276 ORTHO05D003669 9.4e-13 79.3 230 33.9
ATR0752G002 Amborella trichopoda HOM05D000276 ORTHO05D003669 1.2e-12 79.0 187 36.4
Haze_02153 Corylus avellana HOM05D000276 ORTHO05D003669 2.7e-12 77.8 187 35.8
unitig_578.g16749 Utricularia gibba HOM05D000276 ORTHO05D003669 2.7e-12 77.8 187 36.4
Lsat_1_v5_gn_4_145821 Lactuca sativa HOM05D000276 ORTHO05D003669 4.6e-12 77.0 230 33.5
SalBow3G1852 Salvia bowleyana HOM05D000276 ORTHO05D003669 4.6e-12 77.0 230 34.3
Sc16g0002340 Simmondsia chinensis HOM05D000276 ORTHO05D003669 4.6e-12 77.0 180 36.7
Pp3c18_9650 Physcomitrium patens HOM05D000276 ORTHO05D003669 6.1e-12 76.6 186 33.3
Pp3c21_8390 Physcomitrium patens HOM05D000276 ORTHO05D003669 6.1e-12 76.6 186 33.3
SGA_v2.0_scaffold80G25845 Striga asiatica HOM05D000276 ORTHO05D003669 6.1e-12 76.6 187 36.4
HanXRQChr03g0068551 Helianthus annuus HOM05D000276 ORTHO05D003669 7.9e-12 76.3 230 33.0
HanXRQChr09g0256741 Helianthus annuus HOM05D000276 ORTHO05D003669 7.9e-12 76.3 230 33.5
Pp3c19_7610 Physcomitrium patens HOM05D000276 ORTHO05D003669 7.9e-12 76.3 186 33.3
Sc03g0003670 Simmondsia chinensis HOM05D000276 ORTHO05D003669 7.9e-12 76.3 230 33.0
THA.LOC104826565 Tarenaya hassleriana HOM05D000276 ORTHO05D003669 7.9e-12 76.3 230 32.6
Glyma.02G046400 Glycine max HOM05D000276 ORTHO05D003669 1.0e-11 75.9 187 33.7
QL11p050003 Quercus lobata HOM05D000276 ORTHO05D003669 1.0e-11 75.9 187 35.3
Dinv33649 Davidia involucrata HOM05D000276 ORTHO05D003669 1.4e-11 75.5 230 33.5
ECA232G0366 Erigeron canadensis HOM05D000276 ORTHO05D003669 1.4e-11 75.5 230 33.5
Aa31LG1G14630 Aethionema arabicum HOM05D000971 ORTHO05D000901 1.8e-11 75.1 199 33.7
Cfa005231 Carpinus fangiana HOM05D000276 ORTHO05D003669 1.8e-11 75.1 187 35.3
CDE02G4234 Ceratophyllum demersum HOM05D000276 ORTHO05D003669 1.8e-11 75.1 230 33.0
ClCG10G000610 Citrullus lanatus HOM05D000276 ORTHO05D003669 1.8e-11 75.1 180 35.6
HanXRQChr16g0531541 Helianthus annuus HOM05D000276 ORTHO05D003669 1.8e-11 75.1 230 33.0
Rhsim10G0209800 Rhododendron simsii HOM05D000276 ORTHO05D003669 1.8e-11 75.1 230 33.9
Aa31LG1G14640 Aethionema arabicum HOM05D000276 ORTHO05D003669 2.3e-11 74.7 230 32.6
Gohir.A11G174100 Gossypium hirsutum HOM05D000276 ORTHO05D003669 2.3e-11 74.7 187 34.8
Gohir.D11G181200 Gossypium hirsutum HOM05D000276 ORTHO05D003669 3.0e-11 74.3 187 34.2
Gorai.007G193100 Gossypium raimondii HOM05D000276 ORTHO05D003669 3.0e-11 74.3 187 34.2
MBI09_g13308_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D003669 3.0e-11 74.3 230 33.0
Atru.chr3.841 Acer truncatum HOM05D000276 ORTHO05D003669 3.9e-11 73.9 231 32.9
DCAR_000691 Daucus carota HOM05D000276 ORTHO05D003669 3.9e-11 73.9 230 33.9
DCAR_011600 Daucus carota HOM05D000276 ORTHO05D003669 3.9e-11 73.9 230 33.9
FvH4_1g11520 Fragaria vesca HOM05D000276 ORTHO05D003669 3.9e-11 73.9 187 34.2
FAN19G1428 Fragaria x ananassa HOM05D000276 ORTHO05D003669 3.9e-11 73.9 187 34.2
FAN23G3003 Fragaria x ananassa HOM05D000276 ORTHO05D003669 3.9e-11 73.9 187 34.2
FAN26G3449 Fragaria x ananassa HOM05D000276 ORTHO05D003669 3.9e-11 73.9 187 34.2
Mapoly0053s0095 Marchantia polymorpha HOM05D000276 ORTHO05D003669 3.9e-11 73.9 187 33.2
Peaxi162Scf01221g00028 Petunia axillaris HOM05D000276 ORTHO05D003669 3.9e-11 73.9 230 33.0
PGR119G0595 Punica granatum HOM05D000276 ORTHO05D003669 3.9e-11 73.9 230 32.6
MSTRG.20001 Avicennia marina HOM05D000276 ORTHO05D003669 5.1e-11 73.6 230 33.9
MD15G1243400 Malus domestica HOM05D000276 ORTHO05D003669 5.1e-11 73.6 187 34.2
AL8G45450 Arabidopsis lyrata HOM05D000276 ORTHO05D003669 6.7e-11 73.2 230 32.6
CARHR160840 Cardamine hirsuta HOM05D000276 ORTHO05D003669 6.7e-11 73.2 187 34.2
CBR_g55165 Chara braunii HOM05D000276 ORTHO05D003669 6.7e-11 73.2 186 31.2
Eucgr.I02334 Eucalyptus grandis HOM05D000276 ORTHO05D003669 6.7e-11 73.2 230 32.6
Lalb_Chr05g0229771 Lupinus albus HOM05D000276 ORTHO05D003669 6.7e-11 73.2 230 31.3
Peaxi162Scf00362g00836 Petunia axillaris HOM05D000276 ORTHO05D003669 6.7e-11 73.2 230 32.6
THA.LOC104819170 Tarenaya hassleriana HOM05D000276 ORTHO05D003669 6.7e-11 73.2 230 32.2
CSS0004688 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D003669 8.8e-11 72.8 230 33.0
CSS0008790 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D003669 8.8e-11 72.8 230 33.0
MELO3C013757.2 Cucumis melo HOM05D000276 ORTHO05D003669 8.8e-11 72.8 230 32.2
CsaV3_3G000690 Cucumis sativus L. HOM05D000276 ORTHO05D003669 8.8e-11 72.8 230 32.2
Lj2g0001498 Lotus japonicus HOM05D000276 ORTHO05D003669 8.8e-11 72.8 230 31.7
Lalb_Chr16g0391361 Lupinus albus HOM05D000276 ORTHO05D003669 8.8e-11 72.8 230 31.3
Nitab4.5_0006138g0010 Nicotiana tabacum HOM05D000276 ORTHO05D003669 8.8e-11 72.8 230 32.2
RcHm_v2.0_Chr2g0099151 Rosa chinensis HOM05D000276 ORTHO05D003669 8.8e-11 72.8 187 33.7
SGA_v2.0_scaffold207G41911 Striga asiatica HOM05D000276 ORTHO05D003669 8.8e-11 72.8 230 33.0
CiPaw.07G060600 Carya illinoinensis HOM05D000276 ORTHO05D003669 1.1e-10 72.4 230 32.6
Nitab4.5_0000247g0040 Nicotiana tabacum HOM05D000276 ORTHO05D003669 1.1e-10 72.4 230 32.2
Nitab4.5_0005396g0020 Nicotiana tabacum HOM05D000276 ORTHO05D003669 1.1e-10 72.4 230 32.2
Nitab4.5_0013387g0030 Nicotiana tabacum HOM05D000276 ORTHO05D003669 1.1e-10 72.4 230 32.2
SMO356G0431 Selaginella moellendorffii HOM05D000276 ORTHO05D003669 1.1e-10 72.4 185 31.9
Cfa006993 Carpinus fangiana HOM05D000276 ORTHO05D003669 1.5e-10 72.0 230 32.6
CiPaw.08G129900 Carya illinoinensis HOM05D000276 ORTHO05D003669 1.5e-10 72.0 230 32.2
Pp3c22_8870 Physcomitrium patens HOM05D000276 ORTHO05D003669 1.5e-10 72.0 186 32.8
Hund14057 Selenicereus undatus HOM05D000276 ORTHO05D003669 1.5e-10 72.0 230 32.2
AT5G66140 Arabidopsis thaliana HOM05D000276 ORTHO05D003669 2.0e-10 71.6 230 32.2
CARHR281600 Cardamine hirsuta HOM05D000276 ORTHO05D003669 2.0e-10 71.6 230 32.2
Thhalv10004818m.g Eutrema salsugineum HOM05D000276 ORTHO05D003669 2.0e-10 71.6 230 32.2
Thhalv10004820m.g Eutrema salsugineum HOM05D000276 ORTHO05D003669 2.0e-10 71.6 230 32.2
Psat4g101320 Pisum sativum HOM05D000276 ORTHO05D003669 2.0e-10 71.6 201 32.3
Rhsim08G0032400 Rhododendron simsii HOM05D000276 ORTHO05D003669 2.0e-10 71.6 230 33.5
Aqoxy6G02191 Aquilegia oxysepala HOM05D000276 ORTHO05D003669 2.5e-10 71.2 231 32.0
TPR.G25817 Trifolium pratense HOM05D000276 ORTHO05D003669 2.5e-10 71.2 230 31.7
TWI75G0514 Tripterygium wilfordii HOM05D000276 ORTHO05D003669 2.5e-10 71.2 230 32.6
Lj4A222T50 Lonicera japonica HOM05D000276 ORTHO05D003669 3.3e-10 70.9 230 32.2
Prupe.7G170800 Prunus persica HOM05D000276 ORTHO05D003669 3.3e-10 70.9 230 31.7
Sp5g10960 Schrenkiella parvula HOM05D000276 ORTHO05D003669 3.3e-10 70.9 230 33.0
BcaB01g00537 Brassica carinata HOM05D000276 ORTHO05D003669 4.3e-10 70.5 230 33.0
A09p44290 Brassica napus HOM05D000276 ORTHO05D003669 4.3e-10 70.5 230 33.0
C08p26530 Brassica napus HOM05D000276 ORTHO05D003669 4.3e-10 70.5 230 33.0
BolC8t50267H Brassica oleracea HOM05D000276 ORTHO05D003669 4.3e-10 70.5 230 33.0
BraA09t39891Z Brassica rapa HOM05D000276 ORTHO05D003669 4.3e-10 70.5 230 33.0
Glyma.16G126200 Glycine max HOM05D000276 ORTHO05D003669 4.3e-10 70.5 230 31.3
AL5G31670 Arabidopsis lyrata HOM05D000276 ORTHO05D003669 5.7e-10 70.1 230 31.7
BcaC06g33043 Brassica carinata HOM05D000276 ORTHO05D003669 5.7e-10 70.1 230 32.6
C07p46250 Brassica napus HOM05D000276 ORTHO05D003669 5.7e-10 70.1 230 32.6
BolC7t45141H Brassica oleracea HOM05D000276 ORTHO05D003669 5.7e-10 70.1 230 32.6
TPR.G19484 Trifolium pratense HOM05D000276 ORTHO05D003669 5.7e-10 70.1 230 31.3
A03p48220 Brassica napus HOM05D000276 ORTHO05D003669 7.4e-10 69.7 230 32.6
BraA03t13930Z Brassica rapa HOM05D000276 ORTHO05D003669 7.4e-10 69.7 230 32.6
Lj4g0019541 Lotus japonicus HOM05D000276 ORTHO05D003669 7.4e-10 69.7 230 31.3
Os08g0548900 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D003669 7.4e-10 69.7 231 32.5
Sp2g30550 Schrenkiella parvula HOM05D000276 ORTHO05D003669 1.3e-09 68.9 230 31.7
AagrBONN_evm.TU.Sc2ySwM_369.547 Anthoceros agrestis HOM05D000276 ORTHO05D003669 1.7e-09 68.6 227 30.4
Cc02_g16280 Coffea canephora HOM05D000276 ORTHO05D003669 2.2e-09 68.2 231 32.0
Oeu006645.2 Olea europaea HOM05D000276 ORTHO05D003669 2.2e-09 68.2 238 31.9
Carub.0005s1763 Capsella rubella HOM05D000276 ORTHO05D003669 2.8e-09 67.8 232 31.9
Os09g0538200 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D003669 4.8e-09 67.0 231 31.6
AT3G51260 Arabidopsis thaliana HOM05D000276 ORTHO05D003669 6.3e-09 66.6 232 31.5
Cre01.g030850 Chlamydomonas reinhardtii HOM05D000276 ORTHO05D003669 2.4e-08 64.7 218 31.7


User provided reference genes

Program Settings