Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 9.8e-59 229.9 118 100.0
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 3.6e-29 131.7 88 81.8
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 4.4e-27 124.8 128 64.1
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 3.8e-26 121.7 118 63.6
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 4.2e-25 118.2 116 60.3
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 9.3e-25 117.1 122 59.8
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 2.3e-23 112.5 120 56.7
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 3.0e-23 112.1 118 55.9
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 3.3e-22 108.6 115 53.9
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 4.3e-22 108.2 118 53.4
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 7.3e-22 107.5 124 54.0
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 1.3e-21 106.7 118 55.1
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 3.6e-21 105.1 118 53.4
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 4.8e-21 104.8 124 53.2
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.8e-21 104.8 124 53.2
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.0e-20 101.7 122 51.6
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 9.0e-20 100.5 117 52.1
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.2e-19 100.1 118 48.3
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 1.5e-19 99.8 126 50.8
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 2.0e-19 99.4 68 72.1
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 2.0e-19 99.4 118 50.8
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 2.0e-19 99.4 66 74.2
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 2.6e-19 99.0 68 76.5
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.6e-19 99.0 119 52.1
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 4.5e-19 98.2 116 51.7
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 7.6e-19 97.4 76 61.8
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 7.6e-19 97.4 76 61.8
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 7.6e-19 97.4 76 61.8
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 7.6e-19 97.4 76 61.8
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 7.6e-19 97.4 76 61.8
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 7.6e-19 97.4 76 61.8
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 7.6e-19 97.4 76 61.8
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 7.6e-19 97.4 68 75.0
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 7.6e-19 97.4 109 51.4
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 9.9e-19 97.1 68 70.6
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 9.9e-19 97.1 106 54.7
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 9.9e-19 97.1 65 73.8
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.3e-18 96.7 76 61.8
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.3e-18 96.7 76 61.8
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 1.3e-18 96.7 64 75.0
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 1.3e-18 96.7 119 48.7
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.3e-18 96.7 95 61.1
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 4.9e-18 94.7 66 71.2
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 8.4e-18 94.0 76 59.2
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.1e-17 93.6 64 71.9
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 2.4e-17 92.4 76 59.2
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 3.2e-17 92.0 61 75.4
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 3.2e-17 92.0 73 63.0
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 4.2e-17 91.7 65 69.2
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 4.2e-17 91.7 64 70.3
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 5.4e-17 91.3 93 57.0
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 5.4e-17 91.3 68 61.8
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 9.3e-17 90.5 76 56.6
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 9.3e-17 90.5 76 56.6
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 9.3e-17 90.5 76 56.6
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 9.3e-17 90.5 56 76.8
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 9.3e-17 90.5 62 75.8
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 9.3e-17 90.5 57 75.4
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-16 90.1 77 57.1
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 1.2e-16 90.1 77 57.1
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 1.2e-16 90.1 111 50.5
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 1.6e-16 89.7 79 63.3
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 2.1e-16 89.4 118 44.9
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 2.7e-16 89.0 99 56.6
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 6.0e-16 87.8 93 57.0
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 1.0e-15 87.0 108 46.3
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.0e-15 87.0 101 53.5
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.0e-15 87.0 101 53.5
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 1.3e-15 86.7 61 68.9
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 1.3e-15 86.7 78 55.1
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.3e-15 86.7 76 60.5
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 2.3e-15 85.9 62 67.7
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 3.0e-15 85.5 76 55.3
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 3.0e-15 85.5 61 68.9
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 5.1e-15 84.7 54 77.8
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 6.7e-15 84.3 61 65.6
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 8.7e-15 84.0 76 61.8
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 8.7e-15 84.0 71 59.2
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.1e-14 83.6 61 62.3
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.1e-14 83.6 61 62.3
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-14 83.6 71 57.7
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 1.1e-14 83.6 71 57.7
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 1.1e-14 83.6 71 57.7
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 1.1e-14 83.6 71 57.7
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 1.1e-14 83.6 58 67.2
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.5e-14 83.2 61 62.3
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 1.5e-14 83.2 61 63.9
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.9e-14 82.8 61 60.7
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 2.5e-14 82.4 71 56.3
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 5.6e-14 81.3 66 63.6
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 7.4e-14 80.9 89 47.2
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 9.6e-14 80.5 61 63.9
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.6e-13 79.7 61 59.0
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 1.6e-13 79.7 69 58.0
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 2.8e-13 79.0 70 55.7
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 8.1e-13 77.4 61 60.7
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.1e-12 77.0 61 60.7
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-11 73.6 69 52.2
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 1.2e-11 73.6 69 52.2
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 3.4e-11 72.0 69 50.7
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 1.3e-10 70.1 50 66.0
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 1.3e-10 70.1 55 60.0
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 1.3e-10 70.1 55 60.0
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 8.4e-10 67.4 57 57.9
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 8.4e-10 67.4 57 57.9
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 8.4e-10 67.4 57 57.9
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 1.2e-08 63.5 68 54.4
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 1.6e-08 63.2 59 50.8
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 2.7e-08 62.4 89 39.3
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.6e-08 61.6 55 50.9
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 1.0e-07 60.5 48 58.3
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.3e-07 60.1 64 50.0
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 3.9e-07 58.5 65 41.5
HPP92_010558 Vanilla planifolia HOM05D008443 ORTHO05D010587 1.1e-06 57.0 82 40.2
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 3.3e-06 55.5 50 52.0
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 4.3e-06 55.1 51 51.0
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 5.6e-06 54.7 61 47.5
SEGI_04815 Sequoiadendron giganteum HOM05D008443 ORTHO05D010587 7.4e-06 54.3 46 50.0
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 9.6e-06 53.9 82 41.5


User provided reference genes

Program Settings