Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 3.0e-56 221.5 101 100.0
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 1.5e-39 166.0 82 90.2
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 5.7e-39 164.1 82 89.0
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.9e-34 149.1 72 88.9
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 6.3e-30 134.0 81 71.6
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.3e-27 126.3 83 65.1
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 5.0e-27 124.4 80 67.5
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 9.4e-26 120.2 81 65.4
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.0e-24 116.7 82 63.4
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.4e-24 116.3 79 62.0
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 8.8e-24 113.6 79 59.5
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 4.3e-23 111.3 82 58.5
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 8.2e-22 107.1 81 56.8
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.4e-21 106.3 59 71.2
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 1.2e-20 103.2 77 59.7
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.4e-20 101.7 80 57.5
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 1.0e-19 100.1 80 57.5
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 1.3e-19 99.8 80 56.2
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.2e-19 99.0 63 63.5
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.2e-19 99.0 98 51.0
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 2.2e-19 99.0 82 54.9
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 2.9e-19 98.6 80 57.5
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 3.8e-19 98.2 80 53.8
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 5.0e-19 97.8 62 66.1
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 5.0e-19 97.8 85 55.3
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 6.5e-19 97.4 80 52.5
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 6.5e-19 97.4 80 57.5
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.1e-18 96.7 86 52.3
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 1.4e-18 96.3 82 53.7
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.4e-18 96.3 82 53.7
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.9e-18 95.9 78 57.7
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 4.2e-18 94.7 80 52.5
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 4.2e-18 94.7 80 52.5
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 7.2e-18 94.0 82 50.0
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 7.2e-18 94.0 80 51.2
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 9.4e-18 93.6 77 55.8
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 9.4e-18 93.6 61 65.6
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.2e-17 93.2 85 51.8
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 1.2e-17 93.2 82 54.9
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 1.2e-17 93.2 96 47.9
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 1.2e-17 93.2 61 68.9
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 1.2e-17 93.2 61 65.6
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.6e-17 92.8 80 52.5
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 2.1e-17 92.4 79 53.2
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 2.1e-17 92.4 83 53.0
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 2.7e-17 92.0 98 44.9
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.6e-17 91.7 110 43.6
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 3.6e-17 91.7 61 65.6
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 3.6e-17 91.7 79 54.4
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 3.6e-17 91.7 98 43.9
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 3.6e-17 91.7 80 52.5
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 4.7e-17 91.3 61 63.9
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 6.1e-17 90.9 101 45.5
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 6.1e-17 90.9 97 45.4
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 6.1e-17 90.9 79 53.2
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 6.1e-17 90.9 82 50.0
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 7.9e-17 90.5 61 65.6
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 7.9e-17 90.5 80 52.5
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 7.9e-17 90.5 80 52.5
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 7.9e-17 90.5 80 52.5
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 7.9e-17 90.5 58 67.2
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 1.0e-16 90.1 80 51.2
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.0e-16 90.1 78 51.3
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 1.0e-16 90.1 61 62.3
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.4e-16 89.7 61 63.9
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 1.4e-16 89.7 61 60.7
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 1.4e-16 89.7 58 65.5
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 1.8e-16 89.4 63 61.9
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 1.8e-16 89.4 63 61.9
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 1.8e-16 89.4 63 61.9
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 1.8e-16 89.4 63 61.9
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 1.8e-16 89.4 61 59.0
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 2.3e-16 89.0 63 61.9
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 2.3e-16 89.0 79 51.9
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 2.3e-16 89.0 82 47.6
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.3e-16 89.0 82 47.6
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.3e-16 89.0 82 47.6
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.3e-16 89.0 82 47.6
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 2.3e-16 89.0 75 53.3
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 2.3e-16 89.0 63 63.5
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 3.0e-16 88.6 61 62.3
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 3.0e-16 88.6 61 60.7
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 3.0e-16 88.6 57 64.9
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 3.0e-16 88.6 79 53.2
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 3.0e-16 88.6 58 62.1
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 3.9e-16 88.2 63 60.3
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 3.9e-16 88.2 64 57.8
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 3.9e-16 88.2 61 60.7
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 3.9e-16 88.2 61 65.6
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 3.9e-16 88.2 61 62.3
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 3.9e-16 88.2 61 63.9
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 5.1e-16 87.8 61 60.7
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 5.1e-16 87.8 61 60.7
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 6.7e-16 87.4 61 63.9
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 6.7e-16 87.4 61 62.3
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 6.7e-16 87.4 58 60.3
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 6.7e-16 87.4 65 56.9
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 8.8e-16 87.0 81 49.4
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 8.8e-16 87.0 61 60.7
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 8.8e-16 87.0 82 47.6
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 8.8e-16 87.0 61 60.7
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 1.1e-15 86.7 61 57.4
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 1.1e-15 86.7 63 61.9
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 1.1e-15 86.7 63 61.9
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 1.1e-15 86.7 81 49.4
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.1e-15 86.7 80 50.0
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.1e-15 86.7 61 62.3
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 1.5e-15 86.3 67 58.2
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 1.5e-15 86.3 97 43.3
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 1.5e-15 86.3 61 62.3
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 2.0e-15 85.9 65 53.8
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 2.6e-15 85.5 60 61.7
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 2.6e-15 85.5 65 56.9
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 2.6e-15 85.5 58 63.8
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 3.3e-15 85.1 61 57.4
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 3.3e-15 85.1 58 63.8
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 4.4e-15 84.7 63 58.7
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 4.4e-15 84.7 61 60.7
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 4.4e-15 84.7 61 59.0
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 5.7e-15 84.3 61 60.7
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 5.7e-15 84.3 77 53.2
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 5.7e-15 84.3 63 57.1
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 7.4e-15 84.0 61 55.7
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 9.7e-15 83.6 61 60.7
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 9.7e-15 83.6 61 59.0
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 2.8e-14 82.0 77 50.6
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 2.8e-14 82.0 61 60.7
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 2.8e-14 82.0 58 56.9
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 3.7e-14 81.6 64 56.2
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 4.8e-14 81.3 76 50.0
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 8.2e-14 80.5 64 50.0
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 3.1e-13 78.6 67 49.3


User provided reference genes

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