Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 1.1e-190 670.6 584 100.0
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 4.6e-141 505.8 583 84.4
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 4.9e-135 485.7 583 77.9
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 6.4e-135 485.3 583 81.1
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 2.3e-132 476.9 584 82.4
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 1.3e-130 471.1 583 81.0
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 4.8e-130 469.2 583 81.8
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.4e-129 467.6 583 82.0
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 9.0e-129 464.9 583 80.8
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 5.8e-128 462.2 583 82.0
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.3e-127 461.1 583 80.4
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 9.3e-126 454.9 585 76.1
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 3.5e-125 453.0 589 76.7
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 6.0e-125 452.2 581 79.3
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 7.3e-123 445.3 583 78.7
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 1.6e-122 444.1 582 75.3
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.3e-121 439.1 582 77.7
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 7.1e-118 428.7 583 77.4
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 2.1e-117 427.2 589 75.6
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 7.9e-117 425.2 587 68.5
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.8e-116 424.1 583 76.2
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 3.9e-116 422.9 583 75.5
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 1.1e-115 421.4 582 76.5
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 2.5e-115 420.2 505 82.6
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.3e-115 419.9 592 70.9
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 4.3e-115 419.5 581 76.6
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.4e-113 414.5 584 73.1
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.8e-113 414.1 583 75.3
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 6.9e-113 412.1 557 76.1
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 9.0e-113 411.8 583 77.2
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 1.2e-112 411.4 584 73.5
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.5e-112 411.0 583 73.2
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 5.8e-112 409.1 583 76.0
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.7e-111 407.5 584 71.7
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 3.2e-110 403.3 584 72.8
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 4.2e-110 402.9 583 76.2
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 5.5e-110 402.5 583 77.0
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 2.7e-109 400.2 583 74.8
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 3.0e-108 396.7 583 73.9
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.1e-107 394.8 583 70.2
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 1.9e-107 394.0 583 77.0
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.9e-107 394.0 586 72.5
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 9.6e-107 391.7 590 71.5
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.1e-105 388.3 583 58.7
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.1e-105 388.3 585 76.8
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 3.1e-105 386.7 585 70.6
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 4.1e-105 386.3 582 72.5
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 6.9e-105 385.6 583 75.1
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 4.5e-104 382.9 583 72.2
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 5.8e-104 382.5 583 73.1
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 1.7e-103 380.9 509 79.2
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 7.1e-102 375.6 574 63.8
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 1.2e-101 374.8 564 77.1
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.3e-100 371.3 583 73.6
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 3.0e-100 370.2 590 69.5
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 3.9e-100 369.8 223 99.1
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 5.1e-100 369.4 596 67.8
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.1e-99 368.2 588 69.4
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 3.3e-99 366.7 598 67.6
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 4.3e-99 366.3 585 75.2
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 4.8e-98 362.8 584 70.5
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 8.2e-98 362.1 585 74.7
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 8.2e-98 362.1 683 65.4
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 3.1e-97 360.1 583 72.4
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 5.3e-97 359.4 584 73.3
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 1.2e-96 358.2 510 66.7
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 2.6e-96 357.1 317 71.6
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 3.4e-96 356.7 583 72.9
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 5.0e-95 352.8 563 69.6
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 8.5e-95 352.1 628 69.3
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 1.9e-94 350.9 443 85.6
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 1.9e-94 350.9 583 71.7
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 2.5e-94 350.5 598 71.7
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.2e-94 350.1 599 65.9
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 7.2e-94 349.0 534 70.6
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 4.6e-93 346.3 509 75.2
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 1.0e-92 345.1 583 68.3
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.1e-91 341.7 562 73.3
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 3.3e-91 340.1 581 69.5
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 7.4e-91 339.0 562 69.4
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 1.7e-90 337.8 584 71.6
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 2.8e-90 337.0 585 69.4
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.4e-89 334.7 649 60.6
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 3.1e-89 333.6 562 73.3
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 9.1e-89 332.0 587 71.2
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 1.9e-86 324.3 406 70.7
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.6e-85 321.2 328 76.2
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.6e-85 321.2 313 69.0
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 1.0e-84 318.5 364 69.0
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 1.3e-82 311.6 584 70.9
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 8.2e-82 308.9 562 72.1
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 4.7e-77 293.1 584 69.0
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 1.5e-75 288.1 589 66.6
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.5e-75 288.1 558 58.1
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 1.5e-75 288.1 559 43.5
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 1.5e-75 288.1 584 63.4
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 3.7e-74 283.5 593 59.2
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 1.1e-73 282.0 518 70.7
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 5.0e-71 273.1 562 62.1
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 1.6e-69 268.1 594 60.3
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 6.1e-61 239.6 544 65.3
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 1.4e-60 238.4 198 77.3
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 4.3e-54 216.9 586 58.9
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 5.7e-51 206.5 236 61.0
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 4.9e-50 203.4 150 68.0
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.0e-39 167.5 121 69.4
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.5e-38 165.2 244 40.2
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 6.6e-31 139.8 135 54.8
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 3.7e-26 124.0 143 65.0
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 3.7e-26 124.0 143 65.0
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 3.7e-26 124.0 143 65.0
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-25 122.5 75 80.0
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-25 122.5 75 80.0
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 1.9e-25 121.7 75 80.0
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 7.1e-25 119.8 75 78.7
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 6.6e-23 113.2 98 62.2
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.5e-22 112.1 80 67.5
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.6e-22 110.2 75 69.3
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 2.1e-21 108.2 53 98.1
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 8.4e-18 96.3 100 79.0
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 2.7e-16 91.3 295 31.2
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 7.8e-16 89.7 75 53.3
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 1.0e-15 89.4 60 68.3
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 1.3e-15 89.0 226 45.1
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 9.6e-14 82.8 119 63.9
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 9.9e-11 72.8 44 81.8
Thecc.07G078700 Theobroma cacao HOM05D006220 ORTHO05D007590 4.9e-10 70.5 61 59.0
Duzib268G0075 Durio zibethinus HOM05D000101 ORTHO05D000089 2.7e-08 64.7 112 36.6
Duzib268G1572 Durio zibethinus HOM05D000101 ORTHO05D000089 4.6e-08 63.9 156 32.1
Duzib268G0689 Durio zibethinus HOM05D000101 ORTHO05D000089 1.7e-07 62.0 181 30.4
Gohir.D11G298200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.7e-07 62.0 142 33.8
Duzib268G1464 Durio zibethinus HOM05D000101 ORTHO05D000089 2.3e-07 61.6 181 30.4
CSS0022045 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 3.0e-07 61.2 201 29.4
PRCOL_00002721 Prasinoderma coloniale HOM05D006220 ORTHO05D007590 3.0e-07 61.2 333 27.0
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 5.1e-07 60.5 88 38.6
Gorai.007G323100 Gossypium raimondii HOM05D000101 ORTHO05D000089 6.6e-07 60.1 142 33.1
Gohir.A04G033300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 8.7e-07 59.7 173 27.7
PSO170G0213 Papaver somniferum HOM05D006395 ORTHO05D007894 8.7e-07 59.7 88 39.8
Gohir.A04G030608 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.5e-06 58.9 188 28.2
Ciclev10024858m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.9e-06 58.5 187 31.6
COL.COLO4_32230 Corchorus olitorius HOM05D000101 ORTHO05D000089 1.9e-06 58.5 144 31.2
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 3.3e-06 57.8 88 37.5
Gohir.A04G033550 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.3e-06 57.8 156 32.1
Duzib268G0201 Durio zibethinus HOM05D000101 ORTHO05D000089 4.3e-06 57.4 181 29.8
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 5.6e-06 57.0 39 69.2
Ciclev10027590m.g Citrus clementina HOM05D000101 ORTHO05D000089 5.6e-06 57.0 145 33.1
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 5.6e-06 57.0 88 39.8
BcaC02g08052 Brassica carinata HOM05D006395 ORTHO05D007894 7.4e-06 56.6 88 37.5
BcaC02g08055 Brassica carinata HOM05D006395 ORTHO05D007894 7.4e-06 56.6 88 37.5
C04p58990 Brassica napus HOM05D006395 ORTHO05D007894 7.4e-06 56.6 88 37.5
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 7.4e-06 56.6 87 40.2
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 7.4e-06 56.6 88 37.5
Duzib268G0383 Durio zibethinus HOM05D000101 ORTHO05D000089 9.6e-06 56.2 154 31.8


User provided reference genes

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