Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 6.6e-38 160.2 82 100.0
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 6.6e-38 160.2 82 100.0
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 5.6e-37 157.1 82 97.6
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 3.1e-35 151.4 82 91.5
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 6.9e-35 150.2 82 90.2
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.5e-34 149.1 82 90.2
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 2.0e-34 148.7 82 90.2
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 3.4e-34 147.9 82 89.0
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 4.4e-34 147.5 82 89.0
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 5.8e-34 147.1 82 89.0
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 7.6e-34 146.7 81 88.9
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 7.6e-34 146.7 81 88.9
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 9.9e-34 146.4 82 87.8
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 1.3e-33 146.0 82 89.0
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 1.3e-33 146.0 82 87.8
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.3e-33 146.0 82 87.8
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 8.4e-33 143.3 82 86.6
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 8.4e-33 143.3 82 86.6
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.1e-32 142.9 82 85.4
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.1e-32 142.9 82 85.4
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 1.1e-32 142.9 82 87.8
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.1e-32 142.9 82 86.6
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 1.9e-32 142.1 82 82.9
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 2.4e-32 141.7 82 85.4
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 2.4e-32 141.7 82 85.4
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 2.4e-32 141.7 82 85.4
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 3.2e-32 141.4 82 85.4
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 4.2e-32 141.0 82 85.4
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 7.1e-32 140.2 82 84.1
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 7.1e-32 140.2 82 85.4
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 9.3e-32 139.8 82 84.1
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 9.3e-32 139.8 82 84.1
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 9.3e-32 139.8 82 84.1
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 9.3e-32 139.8 82 86.6
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 9.3e-32 139.8 82 82.9
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 1.2e-31 139.4 82 84.1
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.6e-31 139.0 82 85.4
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.6e-31 139.0 82 84.1
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.1e-31 138.7 82 84.1
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 2.1e-31 138.7 82 84.1
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 2.1e-31 138.7 82 81.7
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.1e-31 138.7 82 82.9
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 2.1e-31 138.7 82 84.1
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.5e-31 137.9 76 86.8
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.5e-31 137.9 82 82.9
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 3.5e-31 137.9 82 81.7
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 3.5e-31 137.9 82 80.5
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 4.6e-31 137.5 82 85.4
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 4.6e-31 137.5 82 82.9
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 4.6e-31 137.5 82 84.1
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 6.0e-31 137.1 82 82.9
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 7.8e-31 136.7 82 80.5
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 7.8e-31 136.7 82 80.5
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 7.8e-31 136.7 82 79.3
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 7.8e-31 136.7 82 79.3
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.0e-30 136.3 77 84.4
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 1.0e-30 136.3 82 80.5
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.0e-30 136.3 82 80.5
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.0e-30 136.3 82 82.9
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 1.3e-30 136.0 82 86.6
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 1.3e-30 136.0 82 81.7
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.3e-30 136.0 82 79.3
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 1.3e-30 136.0 82 80.5
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.3e-30 135.2 82 81.7
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 2.3e-30 135.2 82 82.9
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.0e-30 134.8 82 80.5
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 3.9e-30 134.4 82 82.9
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 5.1e-30 134.0 82 81.7
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 5.1e-30 134.0 82 80.5
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 5.1e-30 134.0 82 80.5
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 5.1e-30 134.0 82 80.5
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 5.1e-30 134.0 82 80.5
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 5.1e-30 134.0 82 81.7
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 5.1e-30 134.0 82 80.5
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 5.1e-30 134.0 82 82.9
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 6.6e-30 133.7 82 80.5
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 8.7e-30 133.3 82 82.9
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 1.1e-29 132.9 82 78.0
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.1e-29 132.9 82 80.5
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 1.1e-29 132.9 82 82.9
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 1.1e-29 132.9 82 81.7
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 1.5e-29 132.5 82 80.5
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 1.5e-29 132.5 82 76.8
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 1.5e-29 132.5 82 79.3
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 1.5e-29 132.5 82 76.8
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.5e-29 132.5 81 82.7
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 2.5e-29 131.7 82 80.5
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 3.3e-29 131.3 82 80.5
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 3.3e-29 131.3 82 78.0
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 4.3e-29 131.0 82 81.7
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 4.3e-29 131.0 82 78.0
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 4.3e-29 131.0 82 78.0
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 5.6e-29 130.6 82 80.5
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 5.6e-29 130.6 82 81.7
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 7.3e-29 130.2 82 79.3
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 9.6e-29 129.8 82 76.8
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 9.6e-29 129.8 82 79.3
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.3e-28 129.4 79 79.7
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 1.3e-28 129.4 82 76.8
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 1.3e-28 129.4 82 76.8
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 1.3e-28 129.4 82 80.5
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 1.6e-28 129.0 82 79.3
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 1.6e-28 129.0 82 76.8
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 2.1e-28 128.6 82 75.6
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 2.1e-28 128.6 82 75.6
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 2.1e-28 128.6 82 75.6
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 3.6e-28 127.9 82 75.6
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 3.6e-28 127.9 82 75.6
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.6e-28 127.9 82 74.4
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 4.8e-28 127.5 77 80.5
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 8.1e-28 126.7 82 74.4
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 8.1e-28 126.7 82 78.0
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.1e-27 126.3 82 73.2
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.1e-27 126.3 82 73.2
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 1.1e-27 126.3 82 73.2
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.1e-27 126.3 82 73.2
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 1.8e-27 125.6 82 76.8
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 2.4e-27 125.2 82 75.6
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 3.1e-27 124.8 82 76.8
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 4.0e-27 124.4 82 73.2
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 5.3e-27 124.0 82 73.2
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 6.9e-27 123.6 82 75.6
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 9.0e-27 123.2 81 75.3
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.2e-26 122.9 82 74.4
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 2.6e-26 121.7 82 72.0
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 4.5e-26 120.9 76 75.0
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 6.4e-25 117.1 76 73.7
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 2.7e-23 111.7 82 72.0
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 6.7e-22 107.1 73 69.9
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 3.4e-18 94.7 51 90.2
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 4.5e-18 94.4 56 80.4
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 5.8e-18 94.0 54 81.5
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 6.5e-17 90.5 73 58.9
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 5.5e-16 87.4 70 57.1
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 1.0e-14 83.2 54 74.1
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 1.0e-14 83.2 69 49.3
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 2.5e-13 78.6 67 53.7
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 5.7e-13 77.4 82 52.4
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 7.6e-10 67.0 69 40.6
Pp3c6_9300 Physcomitrium patens HOM05D005249 ORTHO05D006457 2.3e-06 55.5 66 39.4
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 3.9e-06 54.7 38 71.1


User provided reference genes

Program Settings