Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 3.0e-119 431.8 209 100.0
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 3.7e-117 424.9 209 98.1
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 5.3e-108 394.4 209 90.4
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 9.1e-108 393.7 209 89.0
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 5.9e-107 391.0 209 90.4
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 1.7e-106 389.4 209 88.5
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 2.2e-106 389.0 209 87.6
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 6.5e-106 387.5 209 87.1
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 8.5e-106 387.1 209 89.5
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 1.4e-105 386.3 209 87.1
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 1.9e-105 386.0 209 90.9
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 1.9e-105 386.0 209 86.1
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 2.5e-105 385.6 209 89.5
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 7.2e-105 384.0 209 88.0
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 1.2e-104 383.3 209 86.6
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 2.7e-104 382.1 209 86.6
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 3.6e-104 381.7 209 86.1
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 4.7e-104 381.3 209 86.6
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 4.7e-104 381.3 209 87.6
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 6.1e-104 380.9 209 87.1
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 6.1e-104 380.9 209 85.2
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 8.0e-104 380.6 209 87.6
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 8.0e-104 380.6 209 87.6
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.4e-103 379.8 209 86.6
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 1.8e-103 379.4 209 85.2
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 1.8e-103 379.4 209 85.6
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 1.8e-103 379.4 209 86.6
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 3.0e-103 378.6 209 86.1
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 3.0e-103 378.6 209 86.6
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 6.7e-103 377.5 209 87.1
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 8.8e-103 377.1 209 87.1
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 8.8e-103 377.1 209 85.6
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 2.0e-102 375.9 209 85.2
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 2.0e-102 375.9 209 84.2
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 3.3e-102 375.2 209 85.2
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 4.4e-102 374.8 209 86.6
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 4.4e-102 374.8 209 86.1
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 4.4e-102 374.8 209 86.1
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 5.7e-102 374.4 209 84.7
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 7.4e-102 374.0 209 86.1
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 9.7e-102 373.6 209 84.7
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 9.7e-102 373.6 209 85.6
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 1.7e-101 372.9 209 84.7
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 2.2e-101 372.5 209 85.6
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 2.2e-101 372.5 209 84.2
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 2.8e-101 372.1 209 84.2
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 2.8e-101 372.1 209 83.7
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 3.7e-101 371.7 209 85.6
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 3.7e-101 371.7 209 84.2
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 6.3e-101 370.9 209 83.7
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 8.2e-101 370.5 209 85.6
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 8.2e-101 370.5 209 85.6
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 8.2e-101 370.5 209 85.6
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 8.2e-101 370.5 209 83.7
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 1.4e-100 369.8 209 83.7
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 1.4e-100 369.8 209 83.7
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 2.4e-100 369.0 209 83.3
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 4.1e-100 368.2 209 85.2
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 5.3e-100 367.9 209 84.7
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 80.4
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 1.2e-99 366.7 209 85.2
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 1.2e-99 366.7 225 79.6
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 1.6e-99 366.3 210 85.2
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 2.0e-99 365.9 208 82.2
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 5.9e-99 364.4 209 83.3
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 5.9e-99 364.4 209 81.8
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 1.0e-98 363.6 209 83.7
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 1.3e-98 363.2 209 83.7
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 1.7e-98 362.8 209 83.3
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 2.2e-98 362.5 209 84.2
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 3.8e-98 361.7 209 83.3
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 3.8e-98 361.7 209 83.7
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 5.0e-98 361.3 209 82.3
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 5.0e-98 361.3 221 81.0
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 8.5e-98 360.5 209 82.3
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 1.5e-97 359.8 209 83.7
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 1.9e-97 359.4 209 82.3
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 2.5e-97 359.0 208 81.7
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 9.4e-97 357.1 243 73.3
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 2.1e-96 355.9 209 80.9
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 3.6e-96 355.1 230 77.8
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.4e-95 353.2 230 77.4
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 8.8e-95 350.5 189 85.2
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 8.8e-95 350.5 240 74.6
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 5.7e-94 347.8 209 79.4
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 4.8e-93 344.7 209 78.9
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 2.4e-92 342.4 191 86.4
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 5.3e-92 341.3 193 85.0
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 7.0e-92 340.9 196 82.1
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 9.1e-92 340.5 209 76.6
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 9.1e-92 340.5 190 86.3
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 1.6e-91 339.7 209 77.0
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 2.7e-91 339.0 187 86.1
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 3.5e-91 338.6 185 87.6
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 3.8e-90 335.1 187 86.1
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 5.0e-90 334.7 187 86.1
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 5.0e-90 334.7 190 83.7
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 3.6e-88 328.6 288 60.8
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 2.3e-87 325.9 206 74.3
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 1.7e-85 319.7 209 72.2
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 9.1e-84 313.9 208 69.7
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 1.7e-82 309.7 206 71.4
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 8.0e-80 300.8 197 75.1
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 4.0e-79 298.5 209 70.8
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 4.4e-78 295.0 165 83.0
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 5.7e-78 294.7 205 66.8
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 3.9e-74 282.0 165 82.4
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 3.3e-73 278.9 151 85.4
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 2.3e-66 256.1 209 63.6
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 6.6e-66 254.6 179 69.3
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 1.2e-64 250.4 204 60.8
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 1.1e-63 247.3 207 59.9
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 1.7e-61 240.0 210 56.2
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 2.3e-58 229.6 167 65.9
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 1.6e-56 223.4 135 79.3
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 6.8e-55 218.0 206 53.9
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 4.6e-51 205.3 151 68.2
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 5.8e-46 188.3 206 47.1
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 9.6e-41 171.0 207 41.1
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 5.3e-39 165.2 148 60.8
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 9.3e-36 154.5 135 54.8
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 1.2e-35 154.1 127 63.0
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 7.8e-35 151.4 84 83.3
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 4.8e-32 142.1 84 82.1
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 9.0e-31 137.9 135 50.4
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 1.5e-30 137.1 228 37.3
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 7.1e-28 128.3 74 79.7
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 9.3e-20 101.3 52 88.5
QL08p010315 Quercus lobata HOM05D006187 ORTHO05D007621 9.6e-17 91.3 43 95.3


User provided reference genes

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