Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 5.3e-222 774.2 450 100.0
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 2.4e-158 562.8 448 78.3
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 9.6e-155 550.8 451 72.1
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 2.9e-151 539.3 453 69.1
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.2e-150 535.8 471 67.7
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 7.1e-150 534.6 452 73.5
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.3e-146 523.9 461 71.1
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 6.2e-146 521.5 461 68.1
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 2.0e-144 516.5 465 66.5
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.5e-144 515.4 458 71.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.7e-143 513.5 450 73.8
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.3e-140 503.8 479 60.1
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 3.0e-140 502.7 502 63.3
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 6.7e-140 501.5 511 62.4
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 1.1e-139 500.7 455 62.0
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.3e-139 499.2 457 64.1
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 4.3e-139 498.8 502 61.6
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 5.6e-139 498.4 451 63.2
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 7.4e-139 498.0 463 65.2
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.1e-138 496.5 500 60.6
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 2.8e-138 496.1 485 65.4
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-137 493.8 499 61.5
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.4e-137 493.0 500 61.4
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 3.1e-137 492.7 499 60.7
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 5.3e-137 491.9 455 65.9
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 4.5e-136 488.8 460 70.9
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 6.4e-135 485.0 458 65.5
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.1e-134 484.2 476 58.8
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.1e-134 484.2 476 58.8
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.4e-134 483.8 465 63.9
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.9e-134 483.4 458 64.8
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.9e-134 483.4 452 61.7
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 3.2e-134 482.6 471 69.9
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.2e-134 482.3 458 61.4
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.5e-134 481.9 499 61.1
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 3.5e-133 479.2 493 64.1
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.6e-133 478.8 476 58.6
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.3e-132 477.2 452 61.9
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 6.7e-132 474.9 463 60.7
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.6e-130 470.3 461 58.1
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 4.8e-130 468.8 491 55.8
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 4.8e-130 468.8 523 58.1
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.8e-129 466.8 497 55.1
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-129 466.8 458 60.9
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.4e-129 466.5 494 59.3
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 3.1e-129 466.1 517 56.5
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 4.0e-129 465.7 454 63.7
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 6.9e-129 464.9 451 61.4
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 2.6e-128 463.0 530 56.8
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 5.8e-128 461.8 454 63.0
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 4.9e-127 458.8 467 64.2
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 2.5e-126 456.4 483 61.3
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.5e-126 455.3 460 62.0
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 7.1e-126 454.9 489 57.1
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.2e-125 454.1 461 62.0
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.2e-125 454.1 459 62.1
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 2.1e-125 453.4 489 55.8
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 9.7e-123 444.5 510 54.1
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 3.1e-121 439.5 450 58.2
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 4.1e-121 439.1 456 62.7
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 6.9e-121 438.3 477 58.9
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 6.9e-121 438.3 476 59.0
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 6.9e-121 438.3 462 61.0
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 2.6e-120 436.4 463 56.8
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.4e-116 424.1 461 58.4
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 5.1e-116 422.2 455 58.2
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 8.8e-116 421.4 471 59.4
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 3.3e-115 419.5 461 55.5
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 4.3e-115 419.1 469 59.1
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.4e-115 418.3 461 58.1
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.1e-113 414.5 465 60.9
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 2.4e-113 413.3 468 54.7
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 9.1e-113 411.4 481 52.0
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 2.9e-111 406.4 457 58.2
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 6.5e-111 405.2 454 61.7
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 8.5e-111 404.8 466 54.1
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.4e-110 404.1 452 61.5
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.5e-110 403.3 465 52.9
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.5e-110 403.3 456 56.8
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.6e-109 400.6 462 56.3
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.6e-109 400.6 472 53.4
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.7e-109 399.8 461 53.6
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 6.1e-109 398.7 467 57.4
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 1.4e-108 397.5 452 59.5
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.8e-108 397.1 460 53.0
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.5e-107 394.0 461 53.6
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.6e-107 393.3 437 61.6
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 3.7e-106 389.4 460 58.5
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.1e-105 387.9 509 52.3
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.4e-105 387.5 441 57.1
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 3.1e-105 386.3 484 51.7
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 7.0e-105 385.2 475 56.0
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.0e-103 379.0 439 56.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.4e-102 377.5 455 51.2
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.4e-102 377.5 524 52.1
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.9e-102 377.1 481 50.1
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.5e-102 376.7 483 49.9
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 7.2e-102 375.2 451 61.4
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 6.7e-100 368.6 501 49.5
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.3e-98 364.4 416 52.6
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 1.7e-98 364.0 476 50.0
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.7e-95 354.0 474 50.6
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.1e-94 351.3 458 53.9
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 3.0e-92 343.2 453 49.4
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.7e-90 337.4 462 47.4
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 8.3e-90 335.1 198 83.3
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 9.4e-86 321.6 489 44.8
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.7e-83 312.4 419 48.2
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.8e-81 307.4 418 48.6
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 7.7e-80 302.0 173 86.1
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.5e-78 297.7 502 47.6
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 5.5e-78 295.8 462 45.0
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.1e-77 292.4 192 78.1
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 8.0e-77 292.0 504 41.3
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.2e-75 288.1 207 72.5
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.0e-75 287.3 412 46.1
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 7.0e-73 278.9 443 43.3
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 2.0e-72 277.3 446 46.6
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.7e-71 274.2 486 43.6
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 4.4e-67 259.6 354 48.9
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 3.0e-63 246.9 392 45.4
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 8.3e-58 228.8 128 87.5
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.8e-56 222.2 332 47.9
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 3.6e-53 213.4 516 35.5
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.4e-49 201.4 166 66.3
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.1e-44 185.3 410 37.3
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 3.5e-40 170.2 178 53.9
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.0e-39 168.7 415 35.7
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.3e-39 167.5 418 34.7
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 3.1e-36 157.1 168 52.4
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 1.5e-30 138.3 147 48.3
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 2.4e-25 120.9 65 92.3
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.2e-25 120.2 348 33.0
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 2.1e-24 117.9 174 48.9
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.3e-22 110.2 99 60.6
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 6.2e-21 106.3 97 60.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 8.1e-21 105.9 116 56.9
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 4.6e-16 90.1 102 49.0
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 4.6e-16 90.1 102 49.0
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 7.9e-16 89.4 199 33.2
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.5e-14 85.1 424 27.4
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.5e-14 85.1 424 27.4
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 7.4e-14 82.8 49 77.6
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 4.1e-12 77.0 50 70.0
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 6.5e-10 69.7 164 38.4
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 2.3e-07 61.2 139 27.3
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 2.3e-07 61.2 139 27.3
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 2.3e-07 61.2 139 27.3
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 2.3e-07 61.2 139 27.3
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 3.0e-07 60.8 139 27.3
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 3.0e-07 60.8 139 27.3
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 3.0e-07 60.8 139 27.3
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 3.9e-07 60.5 139 27.3
AL5G40990 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 5.1e-07 60.1 139 27.3
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 5.1e-07 60.1 139 27.3
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 5.1e-07 60.1 139 27.3
BcaB02g07484 Brassica carinata HOM05D000230 ORTHO05D000176 6.7e-07 59.7 139 27.3
THA.LOC104803323 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 1.1e-06 58.9 139 26.6
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 3.3e-06 57.4 129 30.2
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 3.3e-06 57.4 129 30.2
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 3.3e-06 57.4 129 30.2
Ciclev10030478m.g Citrus clementina HOM05D000230 ORTHO05D000176 4.3e-06 57.0 136 27.2
ATR0568G101 Amborella trichopoda HOM05D000230 ORTHO05D000176 7.4e-06 56.2 148 27.0
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 7.4e-06 56.2 115 30.4


User provided reference genes

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