Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 6.2e-109 397.5 206 100.0
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 7.1e-89 330.9 206 84.5
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.2e-88 330.1 206 82.0
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 7.9e-88 327.4 206 85.0
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 2.5e-78 295.8 207 77.8
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 4.1e-76 288.5 210 74.3
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 6.9e-76 287.7 207 74.4
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 2.0e-75 286.2 208 76.9
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.0e-75 286.2 208 76.9
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 5.9e-75 284.6 207 75.4
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.0e-74 283.9 208 76.4
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 1.7e-74 283.1 207 73.4
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 3.8e-74 282.0 208 74.0
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 8.5e-74 280.8 208 72.6
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 1.1e-73 280.4 208 74.5
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.9e-73 279.6 208 75.5
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 1.9e-73 279.6 208 75.0
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 9.3e-73 277.3 207 75.8
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 2.1e-72 276.2 207 72.0
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 2.7e-72 275.8 209 75.6
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 4.6e-72 275.0 207 72.9
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 6.1e-72 274.6 207 72.5
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 1.0e-71 273.9 214 70.1
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 2.3e-71 272.7 211 72.5
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 3.0e-71 272.3 218 70.2
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 3.9e-71 271.9 212 72.6
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 5.1e-71 271.6 206 72.8
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 6.7e-71 271.2 206 71.4
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 8.7e-71 270.8 207 72.5
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 8.7e-71 270.8 213 72.8
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 7.4e-70 267.7 210 72.9
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.3e-69 266.9 203 72.9
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.3e-69 266.9 215 67.9
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.6e-69 266.5 208 73.1
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 2.8e-69 265.8 207 71.5
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 2.8e-69 265.8 206 71.8
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 8.2e-69 264.2 207 70.5
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 5.3e-68 261.5 208 71.2
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 1.5e-67 260.0 206 70.4
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 2.0e-67 259.6 208 69.2
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 4.5e-67 258.5 208 70.7
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 1.3e-66 256.9 207 68.1
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 8.5e-66 254.2 213 67.1
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.9e-65 253.1 208 71.6
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 1.9e-65 253.1 208 69.2
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 5.5e-65 251.5 206 68.9
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.2e-64 250.4 208 69.2
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 3.6e-64 248.8 211 68.7
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 6.1e-64 248.1 211 68.2
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 7.9e-64 247.7 209 70.8
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 1.0e-63 247.3 204 68.1
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 3.9e-63 245.4 208 66.8
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 5.1e-63 245.0 206 67.0
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 5.1e-63 245.0 209 68.4
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 5.1e-63 245.0 206 65.0
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 8.8e-63 244.2 213 67.6
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 8.8e-63 244.2 209 68.4
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 1.1e-62 243.8 207 66.7
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.0e-62 243.0 209 67.5
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 2.6e-62 242.7 212 66.5
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.3e-62 242.3 210 66.2
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 4.4e-62 241.9 210 66.7
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 7.4e-62 241.1 208 66.3
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 9.7e-62 240.7 206 67.0
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 9.7e-62 240.7 208 64.4
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 2.2e-61 239.6 208 64.4
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.7e-61 238.8 214 65.9
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.7e-61 238.8 210 65.7
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 4.8e-61 238.4 208 66.3
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 4.8e-61 238.4 207 65.7
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 6.3e-61 238.0 212 68.4
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 6.3e-61 238.0 207 66.7
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 6.3e-61 238.0 209 67.9
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 1.1e-60 237.3 212 69.3
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 1.1e-60 237.3 209 66.5
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 1.1e-60 237.3 210 66.7
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.4e-60 236.9 212 65.1
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 1.8e-60 236.5 212 64.6
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.8e-60 236.5 212 64.6
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 4.1e-60 235.3 209 68.4
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 4.1e-60 235.3 210 66.2
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 4.1e-60 235.3 207 65.2
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 5.3e-60 235.0 208 64.9
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 6.9e-60 234.6 207 64.3
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 9.1e-60 234.2 212 67.9
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 1.2e-59 233.8 214 65.4
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 1.2e-59 233.8 214 65.4
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 1.5e-59 233.4 206 67.0
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 1.5e-59 233.4 210 67.6
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 1.5e-59 233.4 207 63.8
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 3.4e-59 232.3 214 66.4
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 3.4e-59 232.3 214 66.4
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 3.4e-59 232.3 213 67.1
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 4.5e-59 231.9 211 63.0
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 4.5e-59 231.9 214 66.4
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 7.7e-59 231.1 208 65.4
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 2.2e-58 229.6 210 66.7
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 2.2e-58 229.6 209 65.6
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 2.2e-58 229.6 210 66.7
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 2.2e-58 229.6 206 63.1
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 2.2e-58 229.6 207 63.3
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 2.9e-58 229.2 209 65.1
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 2.9e-58 229.2 209 65.1
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 3.8e-58 228.8 209 63.6
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 3.8e-58 228.8 217 62.2
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.0e-58 228.4 211 63.5
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.0e-58 228.4 211 63.5
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 5.0e-58 228.4 211 63.5
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 5.0e-58 228.4 155 74.8
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 6.5e-58 228.0 210 63.8
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 6.5e-58 228.0 206 67.0
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 6.5e-58 228.0 199 64.8
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 1.9e-57 226.5 201 64.2
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.9e-57 226.5 208 63.0
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 2.5e-57 226.1 210 64.8
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 2.5e-57 226.1 206 65.0
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 3.6e-56 222.2 124 90.3
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 3.6e-56 222.2 210 61.0
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 3.0e-55 219.2 207 61.4
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 8.8e-55 217.6 118 91.5
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 8.8e-55 217.6 142 78.9
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 1.5e-54 216.9 209 63.6
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 2.2e-53 213.0 111 92.8
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 2.2e-53 213.0 104 100.0
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 8.2e-53 211.1 104 99.0
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 1.4e-52 210.3 197 61.9
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 1.4e-52 210.3 104 97.1
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.8e-52 209.9 104 98.1
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 5.3e-52 208.4 195 61.0
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 1.2e-51 207.2 164 68.3
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 5.9e-51 204.9 110 92.7
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 1.3e-50 203.8 206 57.3
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 1.7e-50 203.4 166 66.3
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 2.9e-50 202.6 104 94.2
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 1.2e-48 197.2 208 57.7
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 5.2e-47 191.8 103 93.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 8.8e-47 191.0 100 91.0
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 1.0e-42 177.6 125 69.6
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 1.9e-41 173.3 119 72.3
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.9e-41 173.3 122 71.3
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.2e-41 172.6 122 70.5
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 5.5e-41 171.8 121 70.2
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 3.7e-37 159.1 101 75.2
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 5.9e-35 151.8 162 57.4
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 1.0e-34 151.0 203 46.8
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 1.4e-31 140.6 102 63.7
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 1.2e-30 137.5 119 57.1
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 2.3e-23 113.2 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 1.4e-20 104.0 174 37.4
vmacro17432 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 9.2e-12 74.7 207 34.3
PGR142G2751 Punica granatum HOM05D001946 ORTHO05D002111 5.8e-06 55.5 108 32.4
MBI19_g09202_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D244005 9.9e-06 54.7 105 40.0


User provided reference genes

Program Settings