Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020119 Carpinus fangiana HOM05D004807 ORTHO05D021976 6.6e-99 364.0 178 100.0
Cfa020114 Carpinus fangiana HOM05D004807 ORTHO05D005915 2.5e-26 122.9 64 92.2
Atru.chr8.1221 Acer truncatum HOM05D004807 ORTHO05D005915 3.1e-24 115.9 64 87.5
QL07p025555 Quercus lobata HOM05D004807 ORTHO05D005915 4.1e-24 115.5 64 87.5
Ciclev10011630m.g Citrus clementina HOM05D004807 ORTHO05D005915 6.9e-24 114.8 77 74.0
CiPaw.09G026200 Carya illinoinensis HOM05D004807 ORTHO05D005915 3.4e-23 112.5 64 82.8
TWI74G1245 Tripterygium wilfordii HOM05D004807 ORTHO05D005915 3.4e-23 112.5 65 80.0
ClCG10G017810 Citrullus lanatus HOM05D004807 ORTHO05D005915 1.7e-22 110.2 86 67.4
MELO3C009593.2 Cucumis melo HOM05D004807 ORTHO05D005915 1.7e-22 110.2 77 71.4
CsaV3_3G038490 Cucumis sativus L. HOM05D004807 ORTHO05D005915 1.7e-22 110.2 77 71.4
CsaV3_7G005530 Cucumis sativus L. HOM05D004807 ORTHO05D005915 1.7e-22 110.2 77 71.4
GSVIVG01033428001 Vitis vinifera HOM05D004807 ORTHO05D005915 2.2e-22 109.8 77 70.1
Thecc.05G180400 Theobroma cacao HOM05D004807 ORTHO05D005915 2.9e-22 109.4 64 79.7
Sed0007842 Sechium edule HOM05D004807 ORTHO05D005915 6.5e-22 108.2 86 66.3
Eucgr.K01882 Eucalyptus grandis HOM05D004807 ORTHO05D005915 8.5e-22 107.8 64 81.2
Gohir.A09G130500 Gossypium hirsutum HOM05D004807 ORTHO05D005915 8.5e-22 107.8 64 79.7
Potri.006G197200 Populus trichocarpa HOM05D004807 ORTHO05D005915 8.5e-22 107.8 91 62.6
Gohir.D09G126500 Gossypium hirsutum HOM05D004807 ORTHO05D005915 1.1e-21 107.5 88 61.4
vmacro12557 Vaccinium macrocarpon HOM05D004807 ORTHO05D005915 1.4e-21 107.1 64 78.1
Gorai.006G145300 Gossypium raimondii HOM05D004807 ORTHO05D005915 1.9e-21 106.7 64 78.1
Prupe.7G085900 Prunus persica HOM05D004807 ORTHO05D005915 1.9e-21 106.7 64 78.1
Actinidia22072 Actinidia chinensis HOM05D004807 ORTHO05D005915 2.5e-21 106.3 64 76.6
Migut.J01878 Erythranthe guttata HOM05D004807 ORTHO05D005915 2.5e-21 106.3 64 76.6
MD14G1049600 Malus domestica HOM05D004807 ORTHO05D005915 2.5e-21 106.3 64 78.1
Sabra06G0151700 Salix brachista HOM05D004807 ORTHO05D005915 2.5e-21 106.3 64 78.1
CANSAT64G1965 Cannabis sativa HOM05D004807 ORTHO05D005915 3.2e-21 105.9 64 78.1
Actinidia01589 Actinidia chinensis HOM05D004807 ORTHO05D005915 4.2e-21 105.5 64 75.0
COL.COLO4_29436 Corchorus olitorius HOM05D004807 ORTHO05D005915 4.2e-21 105.5 64 76.6
Manes.08G040000 Manihot esculenta HOM05D004807 ORTHO05D005915 4.2e-21 105.5 61 80.3
Rhsim03G0002400 Rhododendron simsii HOM05D004807 ORTHO05D005915 7.2e-21 104.8 64 76.6
RhsimUnG0014500 Rhododendron simsii HOM05D004807 ORTHO05D005915 7.2e-21 104.8 64 76.6
arahy.Tifrunner.gnm1.ann1.14IR3Z Arachis hypogaea HOM05D004807 ORTHO05D005915 9.4e-21 104.4 77 70.1
arahy.Tifrunner.gnm1.ann1.4PIV4R Arachis hypogaea HOM05D004807 ORTHO05D005915 9.4e-21 104.4 77 70.1
PGR142G0165 Punica granatum HOM05D004807 ORTHO05D005915 9.4e-21 104.4 64 78.1
Oeu046734.3 Olea europaea HOM05D004807 ORTHO05D005915 1.2e-20 104.0 64 75.0
SalBow6G5976 Salvia bowleyana HOM05D004807 ORTHO05D005915 1.2e-20 104.0 64 75.0
Lj1A1135G80 Lonicera japonica HOM05D004807 ORTHO05D005915 2.1e-20 103.2 77 62.3
CSS0045552 Camellia sinensis var. sinensis HOM05D004807 ORTHO05D005915 2.7e-20 102.8 64 75.0
Haze_20076 Corylus avellana HOM05D004807 ORTHO05D005915 2.7e-20 102.8 54 90.7
FAN05G1427 Fragaria x ananassa HOM05D004807 ORTHO05D005915 2.7e-20 102.8 67 73.1
FAN05G3467 Fragaria x ananassa HOM05D004807 ORTHO05D005915 2.7e-20 102.8 67 73.1
Rhsim03G0002200 Rhododendron simsii HOM05D004807 ORTHO05D005915 2.7e-20 102.8 64 75.0
THA.LOC104826780 Tarenaya hassleriana HOM05D004807 ORTHO05D005915 4.7e-20 102.1 79 62.0
Glyma.19G204200 Glycine max HOM05D004807 ORTHO05D005915 6.1e-20 101.7 64 78.1
Nn7g35896 Nelumbo nucifera HOM05D004807 ORTHO05D005915 6.1e-20 101.7 64 75.0
unitig_0.g510 Utricularia gibba HOM05D004807 ORTHO05D005915 7.9e-20 101.3 64 71.9
DCAR_017047 Daucus carota HOM05D004807 ORTHO05D005915 1.0e-19 100.9 64 71.9
FvH4_6g21460 Fragaria vesca HOM05D004807 ORTHO05D005915 1.0e-19 100.9 64 75.0
FAN02G2347 Fragaria x ananassa HOM05D004807 ORTHO05D005915 1.0e-19 100.9 64 75.0
FAN09G2962 Fragaria x ananassa HOM05D004807 ORTHO05D005915 1.0e-19 100.9 64 75.0
FAN14G4845 Fragaria x ananassa HOM05D004807 ORTHO05D005915 1.0e-19 100.9 64 75.0
EL10Ac3g06848 Beta vulgaris HOM05D004807 ORTHO05D005915 1.8e-19 100.1 64 71.9
Glyma.03G206600 Glycine max HOM05D004807 ORTHO05D005915 2.3e-19 99.8 64 78.1
Lsat_1_v5_gn_2_58060 Lactuca sativa HOM05D004807 ORTHO05D005915 2.3e-19 99.8 60 75.0
ECA238G3196 Erigeron canadensis HOM05D004807 ORTHO05D005915 3.0e-19 99.4 77 61.0
Lj1g0016427 Lotus japonicus HOM05D004807 ORTHO05D005915 3.0e-19 99.4 64 78.1
Cpa.g.sc85.18 Carica papaya HOM05D004807 ORTHO05D005915 3.9e-19 99.0 64 71.9
Hund19221 Selenicereus undatus HOM05D004807 ORTHO05D005915 3.9e-19 99.0 64 68.8
AT3G11960 Arabidopsis thaliana HOM05D004807 ORTHO05D005915 6.7e-19 98.2 83 55.4
Sc19g0006260 Simmondsia chinensis HOM05D004807 ORTHO05D005915 6.7e-19 98.2 64 70.3
Ah.04g153050 Amaranthus hybridus HOM05D004807 ORTHO05D005915 8.8e-19 97.8 64 68.8
MSTRG.19928 Avicennia marina HOM05D004807 ORTHO05D005915 8.8e-19 97.8 64 70.3
SGA_v2.0_scaffold105G30514 Striga asiatica HOM05D004807 ORTHO05D005915 8.8e-19 97.8 64 68.8
AL3G23560 Arabidopsis lyrata HOM05D004807 ORTHO05D005915 1.5e-18 97.1 97 49.5
AUR62032732 Chenopodium quinoa HOM05D004807 ORTHO05D005915 1.5e-18 97.1 64 70.3
Medtr7g107350 Medicago truncatula HOM05D004807 ORTHO05D005915 1.5e-18 97.1 66 72.7
RcHm_v2.0_Chr3g0478641 Rosa chinensis HOM05D004807 ORTHO05D005915 2.0e-18 96.7 64 75.0
BcaC01g04068 Brassica carinata HOM05D004807 ORTHO05D005915 2.6e-18 96.3 92 53.3
A03p37390 Brassica napus HOM05D004807 ORTHO05D005915 2.6e-18 96.3 92 53.3
Lalb_Chr25g0287671 Lupinus albus HOM05D004807 ORTHO05D005915 2.6e-18 96.3 57 77.2
Sp3g10180 Schrenkiella parvula HOM05D004807 ORTHO05D005915 3.3e-18 95.9 70 61.4
CARHR086510 Cardamine hirsuta HOM05D004807 ORTHO05D005915 4.4e-18 95.5 97 48.5
AUR62015288 Chenopodium quinoa HOM05D004807 ORTHO05D005915 4.4e-18 95.5 64 68.8
BolC3t16806H Brassica oleracea HOM05D004807 ORTHO05D005915 5.7e-18 95.1 97 51.5
BraA03t12900Z Brassica rapa HOM05D004807 ORTHO05D005915 5.7e-18 95.1 97 51.5
Carub.0003s1129 Capsella rubella HOM05D004807 ORTHO05D005915 5.7e-18 95.1 97 49.5
C03p45390 Brassica napus HOM05D004807 ORTHO05D005915 7.4e-18 94.7 92 52.2
Thhalv10019900m.g Eutrema salsugineum HOM05D004807 ORTHO05D005915 7.4e-18 94.7 97 47.4
Nitab4.5_0001079g0110 Nicotiana tabacum HOM05D004807 ORTHO05D005915 7.4e-18 94.7 64 67.2
BcaB06g25560 Brassica carinata HOM05D004807 ORTHO05D005915 9.7e-18 94.4 83 55.4
TAR623G0137 Trochodendron aralioides HOM05D004807 ORTHO05D005915 1.3e-17 94.0 54 79.6
AUR62026870 Chenopodium quinoa HOM05D004807 ORTHO05D005915 1.7e-17 93.6 64 67.2
Lsat_1_v5_gn_3_12560 Lactuca sativa HOM05D004807 ORTHO05D005915 1.7e-17 93.6 60 68.3
SHI30024 Sapria himalayana HOM05D004807 ORTHO05D005915 2.2e-17 93.2 88 53.4
BcaC05g29309 Brassica carinata HOM05D004807 ORTHO05D005915 2.8e-17 92.8 83 54.2
A05p37420 Brassica napus HOM05D004807 ORTHO05D005915 2.8e-17 92.8 83 54.2
BolC5t34266H Brassica oleracea HOM05D004807 ORTHO05D005915 2.8e-17 92.8 83 54.2
BraA05t22540Z Brassica rapa HOM05D004807 ORTHO05D005915 2.8e-17 92.8 83 54.2
Phvul.001G200200 Phaseolus vulgaris HOM05D004807 ORTHO05D005915 2.8e-17 92.8 60 70.0
Solyc10g080630.2 Solanum lycopersicum HOM05D004807 ORTHO05D005915 2.8e-17 92.8 70 62.9
Sopen10g031170 Solanum pennellii HOM05D004807 ORTHO05D005915 2.8e-17 92.8 70 62.9
BcaB04g18703 Brassica carinata HOM05D004807 ORTHO05D005915 4.8e-17 92.0 79 54.4
CAN.G128.57 Capsicum annuum HOM05D004807 ORTHO05D005915 4.8e-17 92.0 64 65.6
EL10Ac4g10205 Beta vulgaris HOM05D000020 ORTHO05D027019 6.3e-17 91.7 76 64.5
VMungo1383G3705 Vigna mungo HOM05D004807 ORTHO05D005915 6.3e-17 91.7 60 68.3
Psat0s2035g0040 Pisum sativum HOM05D004807 ORTHO05D005915 8.2e-17 91.3 79 62.0
Ca_09097_v3 Cicer arietinum L. HOM05D004807 ORTHO05D005915 1.1e-16 90.9 64 70.3
PSO170G3481 Papaver somniferum HOM05D004807 ORTHO05D005915 1.1e-16 90.9 64 62.5
PSO528G0235 Papaver somniferum HOM05D004807 ORTHO05D005915 1.1e-16 90.9 64 62.5
HPP92_017552 Vanilla planifolia HOM05D004807 ORTHO05D005915 1.4e-16 90.5 64 65.6
C05p55980 Brassica napus HOM05D004807 ORTHO05D005915 1.8e-16 90.1 83 53.0
SEGI_25187 Sequoiadendron giganteum HOM05D004807 ORTHO05D005915 1.8e-16 90.1 64 62.5
Aa31LG3G5560 Aethionema arabicum HOM05D004807 ORTHO05D005915 2.4e-16 89.7 61 65.6
Ciclev10011020m.g Citrus clementina HOM05D004807 ORTHO05D005915 3.1e-16 89.4 54 77.8
HanXRQChr14g0438891 Helianthus annuus HOM05D004807 ORTHO05D005915 4.1e-16 89.0 60 65.0
Aqoxy1G00442 Aquilegia oxysepala HOM05D004807 ORTHO05D005915 5.3e-16 88.6 53 77.4
CSS0022615 Camellia sinensis var. sinensis HOM05D004807 ORTHO05D005915 1.2e-15 87.4 54 79.6
ATR0665G460 Amborella trichopoda HOM05D004807 ORTHO05D005915 1.5e-15 87.0 64 60.9
Os07g0203700 Oryza sativa ssp. japonica HOM05D004807 ORTHO05D005915 2.0e-15 86.7 65 64.6
TPR.G32304 Trifolium pratense HOM05D004807 ORTHO05D005915 4.5e-15 85.5 52 75.0
Dinv25024 Davidia involucrata HOM05D004807 ORTHO05D005915 5.9e-15 85.1 54 75.9
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.0e-14 84.3 54 70.4
Zm00001eb302880 Zea mays HOM05D004807 ORTHO05D005915 2.2e-14 83.2 65 61.5
FAN14G5853 Fragaria x ananassa HOM05D004807 ORTHO05D005915 2.9e-14 82.8 54 70.4
AUR62030183 Chenopodium quinoa HOM05D000826 ORTHO05D000250 6.5e-14 81.6 54 70.4
Mapoly0005s0200 Marchantia polymorpha HOM05D004807 ORTHO05D005915 6.5e-14 81.6 64 54.7
Peaxi162Scf00249g00811 Petunia axillaris HOM05D004807 ORTHO05D005915 6.5e-14 81.6 53 69.8
Nitab4.5_0005684g0020 Nicotiana tabacum HOM05D004807 ORTHO05D005915 8.5e-14 81.3 54 70.4
SMO276G0043 Selaginella moellendorffii HOM05D004807 ORTHO05D005915 8.5e-14 81.3 90 50.0
Actinidia22073 Actinidia chinensis HOM05D004807 ORTHO05D005915 1.1e-13 80.9 51 76.5
CDE05G3662 Ceratophyllum demersum HOM05D004807 ORTHO05D005915 1.1e-13 80.9 64 56.2
Pp3c24_19520 Physcomitrium patens HOM05D004807 ORTHO05D005915 5.5e-13 78.6 65 56.9
unitig_0.g511 Utricularia gibba HOM05D004807 ORTHO05D005915 1.0e-11 74.3 51 70.6
CBR_g51523 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-10 69.7 94 38.3
AagrBONN_evm.TU.Sc2ySwM_228.687 Anthoceros agrestis HOM05D004807 ORTHO05D005915 5.7e-10 68.6 73 41.1
Dinv25022 Davidia involucrata HOM05D004807 ORTHO05D005915 5.7e-10 68.6 89 44.9


User provided reference genes

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