Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 2460.6 1246 100.0
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1957.6 1294 78.2
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1763.4 1297 69.7
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1757.7 1294 70.9
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1738.0 1303 69.5
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1734.2 1294 69.8
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1724.9 1296 68.8
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1720.7 1296 69.1
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1715.3 1299 67.4
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1711.8 1087 81.0
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1710.3 1297 69.1
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1691.0 1298 68.3
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1683.3 1322 66.2
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1661.4 1309 66.6
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1660.2 1277 68.3
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1652.5 1306 66.6
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1646.7 1296 66.2
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1645.9 1388 62.8
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1645.6 1294 66.5
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1633.6 1332 64.6
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1630.9 1420 62.4
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1630.2 1292 65.9
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1630.2 1310 65.8
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1626.7 1296 65.2
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1615.9 1292 65.4
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1614.4 1360 62.9
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1613.2 1293 65.4
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1609.3 1243 68.4
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1604.3 1259 66.3
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1602.8 1296 64.2
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1601.3 1297 64.0
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1598.9 1294 64.1
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1592.4 1298 63.9
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1590.1 1298 63.7
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1588.5 1299 64.0
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1588.2 1299 63.9
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1575.8 1298 63.3
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1573.9 1296 63.3
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1569.3 1267 64.4
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1567.7 1297 63.3
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1564.3 1190 68.4
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1558.1 1293 63.7
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1554.7 1096 72.7
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1544.6 1298 63.0
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1543.1 1309 62.6
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1543.1 1299 63.1
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1541.6 1321 61.9
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1537.7 1297 62.8
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1535.8 1299 62.7
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1534.6 1300 62.3
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1528.8 1096 71.4
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1521.5 1313 61.7
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1518.1 1298 60.4
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1490.3 1079 70.1
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1488.4 1289 61.8
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1486.5 1289 61.5
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1485.3 1292 60.3
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1483.4 1296 60.7
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1479.2 1300 60.5
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1473.4 1299 60.0
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1471.1 1298 59.9
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1470.3 1297 59.8
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1469.9 1299 59.8
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1468.8 1297 59.9
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1468.4 1307 59.8
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1467.2 1301 58.7
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1464.5 1295 59.1
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1459.9 1298 59.5
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1455.7 1364 56.9
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1454.5 1297 60.1
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1453.3 1298 59.2
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1453.3 1299 59.5
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1451.0 1298 59.2
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1446.4 1281 59.5
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1444.9 1298 59.9
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1424.1 1314 57.5
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1420.6 1303 58.9
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1412.1 1302 58.5
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1407.5 1122 64.6
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1403.3 1397 56.0
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1403.3 1138 64.1
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1385.5 1294 57.7
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1385.2 1295 57.8
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1380.5 1297 58.5
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1378.2 1270 58.4
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1376.3 1122 65.9
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1369.0 1311 56.4
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1358.6 1161 63.6
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1357.0 1292 56.7
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1355.5 1295 55.1
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1335.9 1265 56.8
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1302.3 1272 55.2
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1284.6 1309 53.2
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1283.5 1083 62.0
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1269.2 1295 52.8
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1268.1 1182 58.3
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1222.6 1298 50.4
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1217.2 1278 51.6
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1214.9 1332 51.3
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1181.0 1292 51.1
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1166.4 1295 49.8
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1083.6 1394 46.4
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.5e-274 950.3 847 59.3
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.3e-265 920.6 647 70.8
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 4.5e-263 912.1 917 53.4
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 4.2e-261 905.6 671 69.4
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 1.8e-248 863.6 1351 39.1
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 3.2e-240 836.3 1117 43.3
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 2.7e-239 833.2 1379 38.9
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.9e-197 694.1 935 43.0
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 8.7e-190 668.7 505 73.3
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 5.0e-185 652.9 568 60.6
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.3e-180 638.3 1286 34.3
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 2.0e-165 587.8 380 79.2
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.0e-157 561.2 659 48.3
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 7.7e-138 496.1 349 74.2
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 2.9e-132 477.6 323 71.8
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 7.3e-128 463.0 463 55.5
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 1.7e-108 398.7 215 89.3
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 1.0e-97 362.8 1080 27.2
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 6.2e-95 353.6 213 80.8
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.6e-93 348.2 210 80.0
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.9e-92 344.0 477 43.6
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 2.4e-86 325.1 213 74.6
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 6.9e-78 297.0 351 48.4
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 1.1e-75 289.7 1289 24.0
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.1e-70 273.1 162 76.5
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.6e-66 257.7 243 52.7
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 3.9e-65 254.6 292 50.0
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 7.4e-64 250.4 145 75.9
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 3.2e-51 208.4 175 59.4
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 6.1e-50 204.1 983 23.1
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.4e-46 193.0 704 26.3
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 6.5e-44 184.1 143 67.8
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 4.7e-42 177.9 153 60.1
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 2.4e-38 165.6 386 32.6
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 5.3e-38 164.5 119 68.9
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.5e-37 161.4 111 67.6
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.9e-37 161.0 207 42.0
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.7e-36 159.5 150 57.3
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 7.2e-35 154.1 109 71.6
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.4e-35 153.7 122 74.6
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.2e-33 147.9 122 55.7
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 2.8e-31 142.1 178 43.3
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 3.7e-31 141.7 133 69.9
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.6e-26 126.3 205 39.0
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.7e-23 116.3 154 39.6
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 8.3e-23 114.0 86 65.1
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.3e-20 106.7 88 60.2
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 1.7e-20 106.3 68 70.6
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 5.0e-20 104.8 85 64.7
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 1.5e-16 93.2 65 64.6
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 9.8e-16 90.5 56 73.2
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 3.0e-12 79.0 87 49.4
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 3.9e-12 78.6 109 42.2
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 8.6e-12 77.4 76 44.7
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 4.0e-09 68.6 38 84.2
Lalb_Chr02g0153261 Lupinus albus HOM05D004363 ORTHO05D005110 4.0e-09 68.6 60 60.0
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 5.2e-09 68.2 41 73.2
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 6.8e-09 67.8 45 71.1
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 1.2e-08 67.0 74 48.6
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 2.9e-07 62.4 74 67.6
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.1e-06 60.5 55 78.2
Lsat_1_v5_gn_5_177961 Lactuca sativa HOM05D004363 ORTHO05D005110 5.4e-06 58.2 53 56.6


User provided reference genes

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