Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 3.4e-71 271.6 137 100.0
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 2.0e-63 245.7 133 91.7
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 2.6e-63 245.4 132 92.4
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 2.6e-63 245.4 132 90.9
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 3.8e-62 241.5 132 90.9
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 3.8e-62 241.5 132 90.9
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 1.1e-61 240.0 132 89.4
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 3.2e-61 238.4 132 91.7
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 4.2e-61 238.0 134 86.6
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 4.2e-61 238.0 123 97.6
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 4.2e-61 238.0 132 89.4
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 1.2e-60 236.5 132 90.9
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.6e-60 236.1 130 89.2
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 1.6e-60 236.1 130 89.2
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 3.5e-60 235.0 132 89.4
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 3.5e-60 235.0 128 89.8
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 4.6e-60 234.6 133 91.0
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 1.3e-59 233.0 132 87.9
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 1.3e-59 233.0 132 87.1
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 1.8e-59 232.6 130 88.5
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 1.8e-59 232.6 134 89.6
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 1.8e-59 232.6 132 87.1
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 2.3e-59 232.3 131 87.0
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 3.9e-59 231.5 132 88.6
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 3.9e-59 231.5 132 87.9
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 6.7e-59 230.7 134 88.8
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 8.7e-59 230.3 129 89.1
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 1.1e-58 229.9 132 89.4
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 1.9e-58 229.2 130 87.7
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 2.5e-58 228.8 134 86.6
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 3.3e-58 228.4 132 87.9
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 3.3e-58 228.4 131 90.1
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 4.3e-58 228.0 133 85.7
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 5.6e-58 227.6 132 85.6
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 5.6e-58 227.6 133 87.2
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 7.4e-58 227.3 132 85.6
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 7.4e-58 227.3 145 80.0
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 7.4e-58 227.3 132 88.6
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 9.6e-58 226.9 132 85.6
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 9.6e-58 226.9 132 86.4
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 1.3e-57 226.5 132 84.8
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.3e-57 226.5 132 85.6
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.3e-57 226.5 133 87.2
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 1.6e-57 226.1 132 84.8
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 1.6e-57 226.1 132 84.8
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 1.6e-57 226.1 132 84.8
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 1.6e-57 226.1 132 86.4
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.6e-57 226.1 132 86.4
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 2.1e-57 225.7 132 87.9
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 2.8e-57 225.3 132 84.8
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 2.8e-57 225.3 132 84.1
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 2.8e-57 225.3 132 90.2
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 3.7e-57 224.9 132 84.1
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 3.7e-57 224.9 133 86.5
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 3.7e-57 224.9 132 85.6
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 3.7e-57 224.9 132 84.8
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 4.8e-57 224.6 132 85.6
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 6.2e-57 224.2 132 84.1
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 8.2e-57 223.8 132 84.8
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 8.2e-57 223.8 133 89.5
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 1.1e-56 223.4 134 85.1
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 1.1e-56 223.4 134 85.1
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 1.4e-56 223.0 130 84.6
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 1.8e-56 222.6 132 84.1
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.4e-56 222.2 133 85.7
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 3.1e-56 221.9 133 86.5
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 3.1e-56 221.9 132 84.1
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 4.0e-56 221.5 132 82.6
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 5.3e-56 221.1 132 87.1
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 6.9e-56 220.7 132 84.1
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 6.9e-56 220.7 134 85.8
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 9.0e-56 220.3 133 85.0
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 9.0e-56 220.3 133 85.0
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 1.2e-55 219.9 173 67.1
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 1.2e-55 219.9 132 82.6
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.2e-55 219.9 129 85.3
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 1.5e-55 219.5 132 81.8
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 1.5e-55 219.5 132 81.8
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 1.5e-55 219.5 132 81.8
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 1.5e-55 219.5 132 81.8
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 1.5e-55 219.5 132 81.8
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 2.0e-55 219.2 133 83.5
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 2.6e-55 218.8 134 83.6
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 3.4e-55 218.4 133 82.7
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 5.8e-55 217.6 134 85.8
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 1.0e-54 216.9 134 85.1
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 1.3e-54 216.5 134 82.8
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 1.7e-54 216.1 132 84.8
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 2.9e-54 215.3 132 82.6
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 6.5e-54 214.2 133 83.5
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 8.4e-54 213.8 134 83.6
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 1.1e-53 213.4 134 83.6
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 1.4e-53 213.0 136 81.6
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 1.4e-53 213.0 134 80.6
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 3.2e-53 211.8 133 83.5
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 5.5e-53 211.1 134 79.1
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 7.1e-53 210.7 133 82.7
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 3.5e-52 208.4 133 82.7
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 3.5e-52 208.4 133 82.7
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 6.0e-52 207.6 132 83.3
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 6.0e-52 207.6 133 82.7
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 6.0e-52 207.6 133 82.7
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 1.0e-51 206.8 132 81.1
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 1.8e-51 206.1 127 82.7
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 2.3e-51 205.7 135 80.0
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 3.0e-51 205.3 136 82.4
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 5.1e-51 204.5 133 82.7
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 8.7e-51 203.8 131 79.4
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 2.2e-49 199.1 134 79.9
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 3.7e-49 198.4 134 79.9
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 3.7e-49 198.4 173 62.4
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 4.8e-49 198.0 132 80.3
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 6.3e-49 197.6 170 67.1
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 8.2e-49 197.2 132 76.5
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 8.2e-49 197.2 133 80.5
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 8.2e-49 197.2 133 79.7
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 8.2e-49 197.2 133 79.7
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 8.2e-49 197.2 130 80.8
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 1.8e-48 196.1 132 78.8
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 1.8e-48 196.1 131 77.9
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 2.4e-48 195.7 133 78.9
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 2.4e-48 195.7 138 76.1
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 3.1e-48 195.3 131 80.9
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 5.3e-48 194.5 133 78.2
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 9.0e-48 193.7 135 75.6
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.2e-47 193.4 133 78.9
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 2.0e-47 192.6 133 79.7
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 2.0e-47 192.6 133 79.7
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 2.0e-47 192.6 133 79.7
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 3.4e-47 191.8 137 74.5
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 7.7e-47 190.7 130 78.5
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 1.7e-46 189.5 132 78.8
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 3.8e-46 188.3 132 78.0
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 1.9e-45 186.0 94 94.7
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 4.2e-45 184.9 132 73.5
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.6e-44 183.0 133 75.2
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 1.6e-44 183.0 130 74.6
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 2.1e-44 182.6 132 76.5
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 3.6e-44 181.8 135 71.1
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 2.3e-43 179.1 115 80.9
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 3.0e-43 178.7 130 73.8
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 3.9e-43 178.3 135 74.1
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 1.5e-42 176.4 132 72.0
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 2.0e-42 176.0 132 73.5
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 2.0e-42 176.0 95 89.5
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 5.7e-42 174.5 133 72.9
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 2.8e-41 172.2 108 83.3
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 2.8e-41 172.2 128 75.8
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 8.2e-41 170.6 133 69.2
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.4e-40 169.9 129 68.2
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.2e-39 166.8 110 82.7
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.3e-38 163.3 121 78.5
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 2.2e-38 162.5 91 87.9
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 5.0e-38 161.4 113 79.6
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 1.1e-37 160.2 110 80.0
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 2.7e-36 155.6 131 67.2
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 3.6e-36 155.2 111 73.0
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 7.9e-36 154.1 109 78.9
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 2.2e-33 146.0 110 73.6
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 9.1e-32 140.6 82 80.5
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 1.7e-30 136.3 123 63.4
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 2.2e-30 136.0 91 83.5
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 6.5e-30 134.4 86 82.6
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 1.9e-29 132.9 131 60.3
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 2.7e-28 129.0 130 55.4
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.5e-26 123.2 94 76.6
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 2.6e-26 122.5 82 76.8
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 9.7e-26 120.6 69 81.2
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 1.3e-25 120.2 77 79.2
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 2.2e-25 119.4 76 80.3
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 2.8e-25 119.0 87 78.2
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 3.7e-25 118.6 64 87.5
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 4.8e-25 118.2 108 65.7
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 4.8e-25 118.2 108 65.7
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 8.2e-25 117.5 132 56.1
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 4.1e-24 115.2 112 58.9
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 9.1e-24 114.0 112 57.1
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 1.9e-21 106.3 85 68.2
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.8e-19 99.8 98 57.1
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 2.2e-17 92.8 76 72.4
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 2.8e-17 92.4 45 88.9
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 2.8e-09 65.9 35 94.3
DCAR_013632 Daucus carota HOM05D003818 ORTHO05D175173 1.0e-06 57.4 78 51.3


User provided reference genes

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