Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 1.1e-262 909.4 451 100.0
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 8.2e-239 830.1 472 87.7
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 1.1e-224 783.1 451 85.4
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 4.5e-213 744.6 449 80.4
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 7.7e-213 743.8 452 81.4
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 4.2e-211 738.0 451 79.8
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 2.1e-210 735.7 451 77.6
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 2.0e-208 729.2 451 76.1
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 2.6e-208 728.8 456 78.1
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 1.3e-207 726.5 446 77.8
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 1.8e-206 722.6 454 79.3
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 4.5e-205 718.0 456 76.3
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 6.5e-204 714.1 447 79.2
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 1.1e-203 713.4 454 76.9
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 2.5e-203 712.2 454 76.4
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 4.7e-202 708.0 446 76.5
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 4.7e-202 708.0 451 75.2
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 6.8e-201 704.1 446 76.0
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.5e-200 703.0 446 75.8
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 1.1e-198 696.8 465 73.3
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 2.7e-197 692.2 456 72.8
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 1.0e-196 690.3 451 75.8
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 2.3e-196 689.1 457 73.5
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 2.9e-196 688.7 456 72.4
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 6.6e-196 687.6 446 74.0
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 4.3e-195 684.9 451 74.3
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 9.5e-195 683.7 456 72.8
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 1.2e-194 683.3 451 74.7
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 2.1e-194 682.6 451 75.2
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 1.8e-193 679.5 464 70.9
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 6.8e-193 677.6 496 67.3
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 3.4e-192 675.2 451 73.4
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 7.0e-190 667.5 451 70.5
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 6.0e-189 664.5 491 68.0
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 1.3e-188 663.3 450 72.9
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 1.7e-188 662.9 453 72.0
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 1.7e-188 662.9 453 71.5
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 2.3e-188 662.5 453 72.4
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 1.9e-187 659.4 453 71.3
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 1.9e-187 659.4 445 71.7
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 2.5e-187 659.1 453 69.8
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 3.3e-187 658.7 455 71.0
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 4.0e-185 651.7 450 68.0
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 5.2e-185 651.4 462 69.9
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 5.2e-185 651.4 445 71.5
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 3.4e-184 648.7 453 67.5
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 3.4e-184 648.7 452 69.9
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 5.8e-184 647.9 453 67.5
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 5.8e-184 647.9 453 67.5
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 2.9e-183 645.6 446 70.9
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 8.3e-183 644.0 415 74.2
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 3.2e-182 642.1 453 67.3
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 2.1e-181 639.4 452 69.0
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 3.5e-181 638.6 452 69.0
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 1.3e-180 636.7 446 70.4
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 1.7e-180 636.3 447 67.6
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 3.3e-179 632.1 458 67.9
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 7.3e-179 630.9 488 64.5
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 2.2e-175 619.4 475 65.5
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.9e-175 619.0 555 58.9
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 6.4e-175 617.8 527 58.8
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 4.1e-174 615.1 430 72.1
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 5.4e-174 614.8 529 61.2
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.9e-171 606.3 450 67.1
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 3.6e-170 602.1 430 68.1
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 2.4e-166 589.3 446 62.8
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.6e-165 585.1 472 63.6
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 7.8e-165 584.3 450 64.4
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.2e-162 577.0 448 61.4
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.4e-161 573.5 413 72.2
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.4e-161 572.8 448 60.9
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.5e-160 570.1 436 65.8
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 2.9e-159 565.8 463 59.2
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 1.5e-155 553.5 447 62.9
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 1.2e-152 543.9 430 63.0
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 1.2e-149 533.9 451 60.1
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 7.4e-147 524.6 405 64.0
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 6.9e-145 518.1 336 72.6
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 2.9e-143 512.7 486 57.0
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 4.9e-143 511.9 356 71.6
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 4.0e-137 492.3 479 54.1
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 4.8e-130 468.8 468 52.6
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 8.2e-130 468.0 410 59.0
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 1.4e-126 457.2 484 47.1
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 4.6e-125 452.2 431 57.8
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 2.0e-120 436.8 395 60.5
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 1.4e-118 430.6 452 53.8
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 4.7e-117 425.6 303 68.0
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 3.3e-115 419.5 459 43.8
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 4.5e-112 409.1 457 46.4
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 5.9e-112 408.7 457 46.4
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.0e-107 393.7 338 61.2
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 5.3e-105 385.6 210 84.8
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 6.3e-98 362.1 201 83.1
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 1.1e-97 361.3 215 79.1
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.6e-96 357.5 273 63.7
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 2.9e-95 353.2 201 82.6
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 1.9e-94 350.5 187 88.2
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.1e-93 347.1 269 63.9
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.1e-89 334.7 200 77.0
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 6.6e-87 325.5 235 68.5
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 1.5e-86 324.3 231 67.1
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.0e-84 316.2 239 65.3
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 1.7e-79 300.8 250 62.4
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.5e-78 297.0 228 58.8
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.7e-77 292.7 169 76.3
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 3.1e-76 290.0 263 58.6
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 1.1e-73 281.6 151 88.1
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 6.0e-72 275.8 172 76.2
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 3.0e-71 273.5 234 54.3
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 6.4e-66 255.8 138 85.5
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 4.1e-65 253.1 212 58.0
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 2.1e-64 250.8 201 61.2
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 3.5e-64 250.0 182 67.0
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.1e-60 238.4 213 55.9
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 7.3e-54 215.7 194 56.2
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 3.8e-50 203.4 338 37.0
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.5e-43 181.4 108 82.4
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.0e-39 168.7 88 81.8
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 1.1e-38 165.2 263 41.1
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 5.8e-35 152.9 276 33.0
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.8e-31 141.4 85 76.5
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 8.7e-31 139.0 244 38.1
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.6e-27 127.5 70 78.6
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 8.7e-23 112.5 269 30.9
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 3.2e-17 94.0 57 82.5
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 1.2e-16 92.0 52 80.8
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.8e-15 88.2 48 79.2
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 6.3e-13 79.7 352 27.0
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 1.4e-07 62.0 54 55.6


User provided reference genes

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