Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.7e-277 958.0 462 100.0
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 2.0e-256 888.6 462 92.6
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 6.7e-220 767.3 462 78.6
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 6.5e-207 724.2 541 66.7
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 4.7e-189 664.8 461 66.8
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 5.2e-188 661.4 463 67.4
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 6.7e-188 661.0 460 66.7
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 4.4e-187 658.3 463 67.2
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 4.2e-182 641.7 461 64.6
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.7e-178 629.8 422 69.0
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.8e-177 626.3 462 64.3
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 3.1e-177 625.5 462 64.1
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 5.5e-174 614.8 461 64.2
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 5.5e-174 614.8 460 63.7
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.1e-169 600.5 462 60.2
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 7.0e-169 597.8 458 61.4
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 9.2e-169 597.4 460 61.3
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 3.5e-168 595.5 461 60.5
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 4.5e-168 595.1 456 61.8
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 3.3e-166 589.0 439 64.0
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.4e-164 583.6 461 60.3
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 2.3e-164 582.8 456 59.9
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 2.6e-163 579.3 405 66.7
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 3.3e-158 562.4 462 58.7
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.2e-157 560.5 460 57.6
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 3.1e-156 555.8 462 57.8
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.3e-154 550.4 464 56.7
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 1.9e-153 546.6 456 59.0
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 4.1e-153 545.4 468 59.2
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 9.2e-153 544.3 459 56.9
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 2.7e-152 542.7 457 55.4
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 4.6e-152 542.0 459 55.6
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 3.9e-151 538.9 507 52.9
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 3.9e-151 538.9 458 54.1
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 3.3e-150 535.8 458 53.7
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.6e-149 533.5 462 52.8
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 8.1e-149 531.2 458 53.9
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 2.3e-148 529.6 461 55.1
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 6.8e-148 528.1 458 53.3
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 2.6e-147 526.2 470 53.8
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 3.7e-146 522.3 466 53.6
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.3e-143 513.1 458 53.3
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 6.6e-143 511.5 458 53.1
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 2.8e-141 506.1 459 52.9
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 9.9e-139 497.7 465 53.3
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.2e-138 496.5 452 53.3
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 4.1e-137 492.3 459 52.1
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.3e-135 486.5 456 52.2
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 8.6e-135 484.6 456 51.5
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.5e-134 483.8 456 52.6
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.9e-134 483.4 456 52.6
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.8e-133 479.6 456 52.4
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.1e-132 476.1 480 50.6
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 6.9e-132 474.9 455 52.1
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 7.6e-131 471.5 465 50.5
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 6.0e-128 461.8 462 51.5
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 6.6e-127 458.4 464 48.5
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 8.7e-127 458.0 474 49.8
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.6e-126 455.3 457 52.3
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 1.6e-125 453.8 461 48.4
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.1e-125 453.4 457 52.3
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.4e-124 450.7 374 57.5
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.4e-122 441.8 461 47.5
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 8.4e-122 441.4 461 47.3
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 8.4e-122 441.4 440 52.0
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.1e-121 441.0 463 49.2
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.9e-121 440.3 462 47.2
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 3.2e-121 439.5 527 46.1
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 4.2e-121 439.1 462 46.8
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 5.4e-121 438.7 374 57.0
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 9.3e-121 438.0 381 57.0
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.1e-120 436.8 461 47.3
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.0e-119 434.5 462 46.5
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.8e-119 433.7 461 47.3
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 3.3e-118 429.5 377 56.0
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 5.6e-118 428.7 452 48.9
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.4e-116 424.1 496 44.0
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 6.9e-116 421.8 481 46.4
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.0e-115 420.2 462 45.9
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.4e-114 415.2 492 43.7
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 9.3e-113 411.4 424 50.2
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.9e-108 395.2 466 43.8
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.3e-106 391.0 458 44.5
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.2e-106 390.2 415 47.0
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 1.6e-104 384.0 476 41.8
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 9.6e-102 374.8 455 44.2
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 6.3e-101 372.1 464 41.4
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 8.2e-101 371.7 456 44.5
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 1.4e-100 370.9 459 42.7
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.5e-99 367.5 457 42.5
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.0e-99 367.1 458 43.4
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 4.5e-99 365.9 473 41.9
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 5.9e-99 365.5 456 43.0
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.7e-98 364.0 453 41.5
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 5.0e-98 362.5 471 41.8
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 6.5e-98 362.1 304 58.6
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.1e-97 361.3 461 44.5
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 4.2e-97 359.4 458 42.8
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.2e-97 359.4 468 42.5
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.2e-97 359.4 468 42.5
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 5.5e-97 359.0 456 42.5
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 9.3e-97 358.2 458 42.4
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.1e-96 357.1 477 41.3
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.0e-95 354.8 458 44.8
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 3.9e-95 352.8 460 41.5
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.1e-94 351.3 476 40.5
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.1e-94 351.3 458 42.6
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 3.3e-94 349.7 458 41.5
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 3.3e-94 349.7 386 46.6
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 7.4e-94 348.6 472 40.9
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 7.4e-94 348.6 461 43.2
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.1e-92 344.7 464 41.6
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.2e-91 341.3 260 61.2
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.6e-91 340.1 255 64.7
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 1.4e-89 334.3 455 38.9
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 6.1e-88 328.9 460 40.2
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 6.1e-88 328.9 460 40.2
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 2.3e-87 327.0 459 40.5
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 5.1e-87 325.9 454 38.1
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 8.8e-87 325.1 460 39.3
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 2.6e-86 323.6 459 40.3
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 7.4e-86 322.0 262 59.5
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.1e-84 318.2 460 38.9
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.2e-83 314.7 319 50.2
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 6.5e-82 308.9 461 37.1
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.1e-81 308.1 464 38.8
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 7.2e-81 305.4 333 46.8
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 1.4e-79 301.2 459 39.0
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 6.7e-79 298.9 425 42.4
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 8.8e-79 298.5 497 35.4
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 2.0e-78 297.4 487 34.5
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 3.7e-77 293.1 311 47.3
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.2e-75 288.1 380 40.3
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 2.6e-75 287.0 490 36.5
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 5.5e-73 279.3 308 47.4
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 2.7e-72 276.9 463 37.1
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 5.2e-71 272.7 493 35.5
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 3.1e-68 263.5 294 46.3
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 3.5e-67 260.0 512 33.6
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.7e-66 257.7 250 50.4
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 5.5e-65 252.7 453 33.3
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.2e-64 251.5 301 44.9
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 1.3e-61 241.5 291 47.8
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 4.1e-60 236.5 355 38.3
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.0e-47 195.3 136 65.4
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 3.0e-47 193.7 196 50.5
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.0e-46 191.0 300 36.7
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 3.4e-46 190.3 178 53.4
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.7e-43 180.6 155 55.5
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.1e-39 168.7 198 47.5
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 1.1e-28 132.1 428 25.2
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 4.6e-27 126.7 196 36.7
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 1.0e-26 125.6 84 72.6
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 3.9e-26 123.6 300 29.7
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 8.6e-26 122.5 71 83.1
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.8e-21 107.1 121 45.5
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 6.6e-18 96.3 138 38.4
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 1.1e-17 95.5 61 70.5
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.5e-17 95.1 162 34.6
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 4.4e-14 83.6 82 40.2
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 3.8e-13 80.5 62 61.3
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.8e-13 80.5 110 41.8
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 5.4e-12 76.6 83 42.2
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 7.1e-12 76.3 64 51.6
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 1.7e-10 71.6 97 47.4
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 1.5e-09 68.6 96 44.8
Cpa.g.sc10.94 Carica papaya HOM05D004162 ORTHO05D004543 6.2e-08 63.2 39 71.8
Dinv32093 Davidia involucrata HOM05D004162 ORTHO05D004543 5.8e-06 56.6 46 65.2


User provided reference genes

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