Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 0.0e+00 1088.2 688 100.0
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 3.1e-306 1054.7 688 97.8
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.2e-228 797.0 694 80.4
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.4e-226 788.1 686 74.1
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 9.6e-223 777.3 686 75.9
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 3.7e-222 775.4 690 76.8
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 8.4e-219 764.2 678 73.9
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 9.3e-218 760.8 686 72.2
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 1.1e-215 753.8 681 75.6
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 9.6e-215 750.7 686 73.3
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 2.8e-214 749.2 680 70.9
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 2.8e-214 749.2 688 74.4
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.8e-214 749.2 678 67.3
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 4.8e-214 748.4 683 74.4
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 4.8e-214 748.4 680 76.3
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 1.4e-213 746.9 689 70.5
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 5.8e-212 741.5 687 73.2
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.7e-211 740.0 682 72.6
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 2.9e-211 739.2 684 74.3
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 8.4e-211 737.6 690 74.5
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 8.4e-211 737.6 687 72.3
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 1.9e-210 736.5 682 73.3
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 3.2e-210 735.7 685 71.8
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 4.2e-210 735.3 686 73.0
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 4.2e-210 735.3 681 74.2
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 2.1e-209 733.0 680 74.1
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 6.0e-209 731.5 636 77.0
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.0e-208 730.7 682 70.2
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.3e-208 730.3 686 72.7
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 6.7e-208 728.0 683 72.8
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.1e-207 727.2 682 69.4
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 2.5e-207 726.1 689 75.8
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 4.3e-207 725.3 669 69.4
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.8e-205 719.9 716 71.6
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 4.1e-205 718.8 678 68.6
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.4e-204 715.7 676 70.6
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.5e-204 715.3 689 68.8
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 5.9e-204 714.9 677 68.4
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.0e-203 714.1 682 72.4
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.8e-203 712.2 682 72.0
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 3.8e-203 712.2 572 76.4
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 5.5e-202 708.4 676 73.5
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 5.5e-202 708.4 691 68.9
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.2e-201 707.2 663 73.5
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 1.6e-201 706.8 692 67.1
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 6.1e-201 704.9 673 68.8
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 7.9e-201 704.5 679 73.9
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 2.3e-200 703.0 710 62.8
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 3.3e-199 699.1 682 72.0
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.1e-197 694.1 670 71.5
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 2.6e-196 689.5 680 72.5
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 6.5e-195 684.9 684 67.0
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.9e-194 683.3 680 71.3
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 3.2e-194 682.6 678 69.8
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 3.2e-194 682.6 687 67.1
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 9.4e-194 681.0 679 69.4
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.2e-193 680.6 685 70.2
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 7.9e-193 677.9 678 66.5
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 2.3e-192 676.4 685 70.1
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 2.3e-192 676.4 679 69.2
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 3.9e-192 675.6 654 68.8
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 5.1e-192 675.2 695 65.6
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 6.7e-192 674.9 683 62.8
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 8.8e-192 674.5 669 67.1
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 5.7e-191 671.8 683 69.5
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.7e-190 670.2 700 68.3
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 7.0e-189 664.8 685 64.1
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 2.0e-188 663.3 689 66.6
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 4.5e-188 662.1 689 66.0
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.7e-187 660.2 669 65.8
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 2.9e-187 659.4 685 69.5
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 5.0e-187 658.7 664 66.1
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 5.0e-187 658.7 662 67.5
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 8.5e-187 657.9 668 65.7
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.1e-186 657.5 658 66.9
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.1e-186 657.5 658 66.9
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.1e-186 657.5 571 72.7
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.4e-186 657.1 682 65.2
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.9e-186 656.8 612 75.8
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.9e-186 656.8 679 65.7
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 2.5e-186 656.4 679 65.8
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.5e-186 656.4 679 65.7
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 3.2e-186 656.0 679 65.5
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 9.4e-186 654.4 660 65.5
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.6e-185 653.7 683 64.4
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 2.1e-185 653.3 690 64.5
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 8.0e-185 651.4 664 65.4
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.0e-184 651.0 679 64.9
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.8e-184 650.2 684 65.1
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 6.7e-184 648.3 682 68.6
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.1e-183 647.5 564 72.9
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 4.4e-183 645.6 685 63.9
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 4.4e-183 645.6 670 64.5
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.7e-182 643.7 654 65.6
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 6.3e-182 641.7 534 83.9
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 6.3e-182 641.7 689 63.3
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 6.3e-182 641.7 682 67.4
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.3e-182 641.7 668 59.4
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 4.1e-181 639.0 670 64.2
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.6e-180 637.1 654 68.2
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 4.5e-180 635.6 676 68.2
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 4.5e-180 635.6 680 61.8
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 5.5e-178 628.6 731 60.1
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 2.5e-170 603.2 654 61.8
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 3.2e-170 602.8 670 55.5
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 1.2e-169 600.9 626 64.9
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 3.0e-168 596.3 654 63.3
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 9.8e-167 591.3 592 68.2
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 4.5e-164 582.4 680 62.8
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 9.5e-162 574.7 536 70.7
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.2e-159 567.8 684 66.8
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.2e-158 563.5 670 60.3
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 2.4e-149 533.5 603 58.5
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.7e-147 527.3 737 60.8
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 2.2e-142 510.4 527 67.9
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 3.0e-139 500.0 699 49.2
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 3.0e-139 500.0 533 65.7
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 6.6e-139 498.8 531 63.5
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 5.8e-135 485.7 682 50.9
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.6e-129 466.5 677 48.7
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.3e-126 458.0 507 63.5
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.6e-115 419.1 620 46.5
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.3e-105 388.3 301 69.1
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 6.2e-105 386.0 551 42.5
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 9.0e-104 382.1 309 67.3
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 3.3e-98 363.6 254 72.4
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.7e-97 360.1 512 49.8
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.0e-96 356.7 477 58.5
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 9.3e-93 345.5 321 67.9
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 3.8e-86 323.6 476 54.6
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 2.1e-76 291.2 294 54.1
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 3.6e-76 290.4 225 79.6
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.4e-75 288.5 353 52.7
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 5.3e-72 276.6 175 77.7
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 3.5e-71 273.9 275 57.5
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 1.0e-70 272.3 390 55.9
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.9e-69 268.1 279 74.6
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 5.2e-67 260.0 319 60.2
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 1.7e-62 245.0 216 83.3
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 4.4e-58 230.3 138 81.2
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 1.6e-55 221.9 236 49.2
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.4e-51 208.8 221 53.8
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 4.0e-51 207.2 306 44.8
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 5.4e-48 196.8 111 85.6
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 2.3e-46 191.4 289 66.1
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 8.6e-46 189.5 111 82.9
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 8.0e-44 183.0 167 61.1
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.8e-40 171.8 85 94.1
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 5.4e-40 170.2 187 57.8
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 8.3e-33 146.4 322 48.1
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.1e-29 136.0 96 72.9
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.9e-29 135.2 93 73.1
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.6e-28 132.1 96 72.9
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.2e-28 130.2 105 65.7
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.9e-21 108.6 131 42.0
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 2.5e-21 108.2 69 73.9
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 3.1e-19 101.3 611 26.4
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 2.7e-15 88.2 68 63.2
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 6.0e-15 87.0 62 66.1
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.3e-14 85.1 66 65.2
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 3.3e-13 81.3 72 58.3
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 2.1e-12 78.6 172 34.3
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 3.6e-12 77.8 64 57.8
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 3.6e-12 77.8 169 36.7
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 3.4e-10 71.2 75 49.3
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.4e-10 71.2 51 66.7
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 4.4e-10 70.9 120 39.2
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 7.6e-10 70.1 531 27.1
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 1.1e-08 66.2 169 30.2
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.4e-08 65.9 59 55.9
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 2.4e-08 65.1 45 64.4
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 3.2e-08 64.7 54 59.3
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 3.2e-08 64.7 49 63.3
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 5.4e-08 63.9 217 24.4
Oeu049536.1 Olea europaea HOM05D003766 ORTHO05D004607 3.5e-07 61.2 120 38.3
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 1.0e-06 59.7 68 54.4


User provided reference genes

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