Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 2.2e-261 905.2 488 100.0
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 1.1e-209 733.4 576 75.5
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.8e-170 603.2 535 66.2
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 4.8e-168 595.1 489 73.2
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 2.3e-154 549.7 555 59.8
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 2.2e-152 543.1 562 59.1
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 1.0e-149 534.3 549 58.5
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 1.6e-147 526.9 517 59.2
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.7e-147 526.2 558 59.1
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 8.2e-144 514.6 555 57.3
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 7.0e-143 511.5 544 57.9
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 5.9e-142 508.4 538 58.7
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 1.7e-141 506.9 567 56.4
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.2e-141 506.5 538 57.2
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 2.9e-141 506.1 544 55.7
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 3.8e-141 505.8 527 57.9
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 8.5e-141 504.6 542 56.8
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.5e-140 503.8 474 61.2
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 2.5e-140 503.1 527 57.5
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 7.2e-140 501.5 538 58.4
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 1.4e-138 497.3 482 60.0
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 2.3e-138 496.5 537 56.1
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 8.8e-138 494.6 557 55.5
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 2.0e-137 493.4 511 58.1
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 2.0e-137 493.4 527 57.3
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 9.8e-137 491.1 524 57.6
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 9.8e-137 491.1 540 55.0
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 2.8e-136 489.6 565 54.3
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 4.8e-136 488.8 557 56.0
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.1e-135 487.6 559 55.8
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 2.4e-135 486.5 580 53.3
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 9.1e-135 484.6 521 56.2
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 9.1e-135 484.6 578 53.1
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.5e-134 482.3 553 55.2
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 5.9e-134 481.9 539 55.8
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 1.0e-133 481.1 540 55.0
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.3e-133 480.7 560 54.3
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 1.7e-133 480.3 520 56.0
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 3.8e-133 479.2 548 55.7
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 8.5e-133 478.0 549 53.9
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.1e-132 477.6 549 54.8
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 1.1e-132 477.6 522 56.5
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 2.5e-132 476.5 523 56.0
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 2.7e-131 473.0 537 55.7
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 1.0e-130 471.1 530 55.7
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 1.8e-130 470.3 540 54.1
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 2.3e-130 469.9 562 52.8
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 3.0e-130 469.5 542 53.3
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 1.2e-129 467.6 541 53.2
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 4.4e-129 465.7 547 53.0
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 5.7e-129 465.3 535 55.0
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 7.5e-129 464.9 545 53.8
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 1.3e-128 464.2 492 57.1
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 6.3e-128 461.8 536 53.7
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 1.8e-127 460.3 533 53.5
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 5.4e-127 458.8 526 54.9
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 7.0e-127 458.4 532 54.3
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 7.0e-127 458.4 532 53.4
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 7.0e-127 458.4 544 53.1
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 9.2e-127 458.0 517 54.9
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 9.2e-127 458.0 602 49.3
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.6e-126 457.2 489 57.1
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 4.5e-126 455.7 541 51.9
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 1.0e-125 454.5 527 52.6
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.3e-125 454.1 524 53.6
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 1.3e-125 454.1 537 53.1
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 6.6e-125 451.8 528 53.0
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.5e-124 450.7 567 51.9
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 2.5e-124 449.9 523 53.9
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 1.4e-122 444.1 506 53.2
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 3.0e-122 443.0 542 52.0
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.0e-122 443.0 507 54.0
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 3.0e-122 443.0 563 50.8
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 4.0e-122 442.6 569 49.9
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 6.8e-122 441.8 563 50.8
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 6.8e-122 441.8 546 49.8
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 6.8e-122 441.8 556 51.3
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 2.2e-120 436.8 553 49.7
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.9e-120 436.4 506 53.6
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 1.1e-119 434.5 497 55.9
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 3.2e-119 433.0 531 50.7
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.2e-119 433.0 508 53.5
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 5.4e-119 432.2 542 52.0
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 7.0e-119 431.8 519 52.6
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 9.2e-119 431.4 535 50.1
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 1.0e-117 427.9 510 52.7
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.3e-117 427.6 510 52.7
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 1.3e-117 427.6 578 49.0
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 3.9e-117 426.0 558 49.1
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 1.9e-116 423.7 532 51.5
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 3.6e-115 419.5 491 52.3
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 6.2e-115 418.7 550 48.5
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 8.0e-115 418.3 559 49.6
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 1.0e-114 417.9 516 50.8
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 8.9e-114 414.8 614 47.2
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 3.4e-113 412.9 571 48.2
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 4.9e-112 409.1 545 48.6
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 4.6e-110 402.5 459 52.7
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 1.3e-109 401.0 571 46.8
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 8.6e-109 398.3 444 55.0
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 1.5e-108 397.5 522 50.0
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 3.3e-108 396.4 526 48.9
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 4.1e-103 379.4 565 45.5
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.2e-102 377.9 451 52.5
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 4.6e-102 375.9 543 45.7
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.1e-100 371.3 525 46.3
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 2.8e-99 366.7 498 48.8
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 8.1e-91 338.6 342 61.7
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 1.5e-89 334.3 442 47.5
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 2.6e-89 333.6 353 59.2
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 3.4e-89 333.2 594 41.1
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 5.3e-82 309.3 445 45.6
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 5.8e-81 305.8 452 47.3
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.3e-80 304.7 508 42.5
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 8.7e-77 292.0 321 55.8
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 2.5e-76 290.4 563 38.4
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 7.4e-76 288.9 569 39.4
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 1.3e-75 288.1 507 43.6
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 3.7e-59 233.4 206 62.1
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 8.2e-59 232.3 310 49.7
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 1.1e-55 221.9 178 69.1
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 3.0e-53 213.8 253 53.8
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 2.8e-51 207.2 210 59.5
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 5.9e-49 199.5 241 48.5
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 4.2e-47 193.4 241 47.7
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 9.4e-47 192.2 126 82.5
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.1e-42 178.7 350 38.3
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 1.4e-42 178.3 270 48.1
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 1.4e-37 161.8 188 52.7
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 1.4e-37 161.8 188 52.7
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 1.7e-32 144.8 154 61.0
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 3.2e-31 140.6 255 38.4
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.6e-28 131.0 154 53.2
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.3e-27 128.6 100 70.0
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 5.0e-24 116.7 105 52.4
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.1e-18 97.1 62 75.8
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 3.2e-15 87.4 62 71.0
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 1.6e-14 85.1 414 27.1
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 4.7e-14 83.6 85 52.9
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 1.4e-13 82.0 72 69.4
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 6.8e-13 79.7 47 83.0
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 8.8e-13 79.3 77 53.2
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 8.8e-13 79.3 67 61.2
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 2.8e-11 74.3 69 58.0
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 4.9e-11 73.6 102 46.1
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 1.1e-10 72.4 57 73.7
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.7e-09 67.8 77 55.8
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.8e-08 63.9 37 78.4
MBI03_g15603_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.3e-07 59.7 75 50.7
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 6.1e-06 56.6 67 52.2


User provided reference genes

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