Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 5.0e-186 654.4 366 100.0
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 5.4e-156 554.7 352 84.9
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 2.2e-117 426.4 336 74.4
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.6e-115 420.2 345 66.4
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 6.9e-95 351.7 351 55.8
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.7e-93 347.1 343 56.3
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 4.2e-92 342.4 349 57.0
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 6.3e-88 328.6 345 53.3
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.0e-86 323.6 354 60.2
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.0e-86 323.6 342 53.5
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 2.6e-86 323.2 349 52.4
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 5.9e-86 322.0 351 52.4
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 6.5e-85 318.5 348 52.6
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 3.2e-84 316.2 343 51.9
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 2.3e-82 310.1 344 51.2
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 3.9e-82 309.3 405 48.4
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 8.8e-82 308.1 344 50.9
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 1.1e-81 307.8 363 51.8
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.4e-81 305.8 406 47.5
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 5.7e-81 305.4 372 48.7
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 7.4e-81 305.1 406 48.3
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.3e-80 304.3 339 50.7
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.8e-80 303.1 406 48.0
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 3.7e-80 302.8 344 50.6
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 3.7e-80 302.8 344 52.3
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.1e-79 301.2 406 47.8
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 9.1e-79 298.1 406 47.3
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.5e-76 290.0 352 47.7
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 4.0e-74 282.7 267 58.8
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 4.0e-74 282.7 340 48.2
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 5.2e-74 282.3 317 53.0
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 2.0e-73 280.4 328 51.5
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.1e-71 274.6 330 57.0
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 9.1e-71 271.6 353 51.8
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 3.2e-68 263.1 337 49.6
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 5.5e-68 262.3 259 57.5
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 1.2e-65 254.6 339 46.0
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 1.5e-65 254.2 339 47.5
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 3.7e-64 249.6 350 45.1
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 3.7e-64 249.6 337 43.9
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 5.4e-63 245.7 340 45.3
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 7.0e-63 245.4 309 48.5
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 9.1e-63 245.0 262 53.1
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 3.5e-62 243.0 339 46.0
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 2.9e-61 240.0 230 57.8
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 8.5e-61 238.4 352 44.6
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.1e-60 238.0 362 42.3
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 1.5e-60 237.7 345 43.5
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 1.9e-60 237.3 345 44.6
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.2e-60 235.3 273 50.9
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 9.5e-60 235.0 342 49.4
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 1.6e-59 234.2 338 44.4
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 2.1e-59 233.8 350 44.0
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 8.0e-59 231.9 349 43.8
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 1.4e-58 231.1 252 53.2
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 6.8e-58 228.8 356 44.9
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 8.8e-58 228.4 362 42.8
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 1.5e-57 227.6 387 39.3
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 2.0e-57 227.3 373 39.1
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.6e-57 226.9 210 61.9
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 4.4e-57 226.1 271 50.2
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.3e-56 224.6 348 43.7
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.7e-56 224.2 308 47.1
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.7e-56 224.2 349 41.8
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 6.3e-56 222.2 382 40.8
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 1.8e-55 220.7 345 41.2
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.8e-55 220.7 365 41.1
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 5.4e-55 219.2 294 42.5
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 4.5e-54 216.1 258 50.8
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 7.8e-54 215.3 333 43.2
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.3e-53 213.8 323 43.0
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 6.6e-53 212.2 359 39.3
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.1e-52 211.5 349 39.5
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 1.5e-52 211.1 235 54.5
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 9.5e-52 208.4 272 47.4
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.6e-51 207.6 356 40.7
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 2.1e-51 207.2 273 46.2
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.0e-50 204.9 333 41.4
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.4e-50 204.5 407 38.8
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 1.8e-50 204.1 406 37.2
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 5.7e-49 199.1 400 36.5
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 4.9e-48 196.1 362 39.5
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 6.4e-48 195.7 342 38.6
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 2.4e-47 193.7 414 35.3
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 2.4e-47 193.7 348 40.8
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 1.2e-46 191.4 334 39.5
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.7e-46 190.3 279 43.0
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.3e-45 187.2 187 54.0
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 2.3e-45 187.2 411 34.5
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 4.3e-44 183.0 268 47.8
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 5.6e-44 182.6 409 35.0
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 9.5e-44 181.8 406 35.0
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.6e-43 181.0 253 42.3
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 2.8e-43 180.3 318 40.3
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 3.1e-42 176.8 262 46.6
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 5.2e-42 176.0 273 41.0
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 3.7e-40 169.9 338 39.6
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 4.9e-40 169.5 359 36.2
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 7.8e-38 162.2 368 35.9
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 1.7e-37 161.0 217 43.8
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 1.7e-37 161.0 195 50.3
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 8.6e-37 158.7 115 70.4
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 1.5e-36 157.9 381 34.4
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 4.3e-36 156.4 370 34.1
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 6.8e-34 149.1 105 63.8
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.4e-31 140.6 219 43.4
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 5.4e-31 139.4 255 39.2
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.2e-30 138.3 278 33.5
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 1.2e-30 138.3 288 34.7
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 6.0e-30 136.0 190 43.2
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 1.9e-28 131.0 287 33.4
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 1.8e-26 124.4 406 28.1
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.3e-24 118.2 142 52.1
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 1.7e-24 117.9 285 33.3
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 7.8e-22 109.0 78 61.5
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.7e-21 107.8 86 60.5
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 4.3e-20 103.2 256 32.0
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 2.8e-19 100.5 134 44.8
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.1e-18 98.6 134 44.8
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.0e-18 96.7 69 62.3
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.5e-17 94.7 72 65.3
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.0e-13 82.0 59 78.0
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.7e-13 81.3 65 73.8
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 2.3e-13 80.9 61 57.4
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.3e-13 80.9 117 35.9
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 1.3e-11 75.1 103 45.6
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.3e-10 69.7 97 43.3
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 9.0e-10 68.9 190 35.8
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 2.2e-08 64.3 67 58.2


User provided reference genes

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