Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 9.7e-168 594.3 581 100.0
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 6.3e-159 565.1 577 97.9
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 2.8e-130 469.9 563 90.9
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 4.1e-126 456.1 566 89.2
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.3e-116 423.7 557 86.4
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 8.7e-116 421.8 566 80.9
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 3.3e-115 419.9 559 85.3
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 4.3e-115 419.5 556 86.5
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 7.3e-115 418.7 555 87.0
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.4e-113 414.5 554 83.4
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.4e-113 414.5 561 84.5
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.4e-113 413.7 556 87.2
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 6.9e-113 412.1 561 84.3
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 9.0e-113 411.8 561 84.1
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 2.0e-112 410.6 556 86.0
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 4.4e-112 409.5 562 84.7
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 4.9e-111 406.0 551 85.7
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 6.4e-111 405.6 560 85.9
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 6.4e-111 405.6 560 85.5
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 1.9e-110 404.1 549 85.4
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 3.2e-110 403.3 570 82.8
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 4.2e-110 402.9 560 85.9
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 7.1e-110 402.1 558 85.3
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 4.6e-109 399.4 545 86.2
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.3e-108 397.9 561 79.7
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 5.6e-107 392.5 560 73.4
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.6e-106 391.0 547 84.6
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 1.1e-105 388.3 567 81.3
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.8e-105 387.5 567 82.2
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 1.8e-105 387.5 555 83.1
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 3.4e-104 383.3 569 80.0
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 3.4e-104 383.3 560 83.4
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 2.9e-103 380.2 571 80.0
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 8.4e-103 378.6 554 82.9
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.4e-102 377.9 549 83.4
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 4.2e-102 376.3 553 83.4
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 5.4e-102 375.9 554 82.5
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 1.0e-100 371.7 558 80.6
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 1.1e-99 368.2 552 84.6
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 1.9e-99 367.5 567 80.6
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 3.3e-99 366.7 534 85.2
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.3e-98 364.8 556 82.0
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 2.8e-98 363.6 564 82.8
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.4e-97 361.3 556 80.8
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.4e-97 361.3 567 79.9
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 2.4e-97 360.5 542 80.1
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.5e-96 357.8 558 81.9
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.0e-96 357.5 549 80.5
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 3.4e-96 356.7 549 81.1
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 5.8e-96 355.9 550 80.9
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 9.9e-96 355.1 545 78.3
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 3.8e-95 353.2 568 79.4
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 6.4e-95 352.4 541 82.3
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 1.1e-94 351.7 556 80.0
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.4e-94 351.3 519 83.8
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 4.2e-94 349.7 551 81.1
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 4.2e-94 349.7 550 80.2
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 3.5e-93 346.7 505 87.5
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 6.0e-93 345.9 562 79.2
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.0e-92 345.1 567 78.1
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 3.9e-92 343.2 200 80.5
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 3.9e-92 343.2 564 79.6
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 1.9e-91 340.9 355 82.0
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 9.6e-91 338.6 566 78.6
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 9.6e-91 338.6 556 78.2
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.6e-90 337.8 542 75.3
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.6e-90 337.8 545 75.0
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.6e-90 337.8 558 80.3
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 4.8e-90 336.3 542 75.8
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 6.2e-90 335.9 562 80.2
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 8.2e-90 335.5 564 79.1
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 8.2e-90 335.5 571 72.3
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.1e-89 335.1 542 75.1
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 1.4e-89 334.7 564 78.9
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 4.0e-89 333.2 542 75.3
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 4.0e-89 333.2 562 80.2
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 5.3e-89 332.8 552 79.5
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 4.5e-88 329.7 542 75.3
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 4.5e-88 329.7 569 75.9
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 3.2e-86 323.6 552 80.4
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.6e-85 321.2 555 77.7
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 4.6e-85 319.7 535 80.7
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 6.0e-85 319.3 561 77.4
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.3e-84 318.2 547 79.9
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 1.8e-81 307.8 544 79.0
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 9.0e-81 305.4 204 70.1
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 9.0e-81 305.4 497 78.3
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 5.9e-80 302.8 201 71.1
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 1.0e-79 302.0 218 67.0
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.2e-79 300.8 545 73.4
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 2.2e-79 300.8 563 69.6
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 5.0e-79 299.7 553 77.0
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.4e-78 298.1 201 68.7
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 2.5e-78 297.4 550 77.1
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 9.4e-78 295.4 547 60.7
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.7e-71 274.6 351 74.9
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 4.7e-61 240.0 491 80.2
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 1.0e-60 238.8 508 78.5
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 5.9e-56 223.0 504 76.2
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 1.6e-53 214.9 338 62.1
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 1.5e-51 208.4 549 67.0
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 2.0e-40 171.4 239 87.0
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.8e-36 158.3 128 60.2
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 6.8e-28 129.8 202 33.2
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 2.6e-27 127.9 88 68.2
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 2.9e-26 124.4 81 74.1
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 3.2e-25 120.9 81 71.6
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.9e-23 114.0 133 48.9
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 6.6e-23 113.2 72 79.2
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.5e-22 111.3 79 70.9
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 1.1e-20 105.9 196 29.1
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 4.4e-19 100.5 428 79.2
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.2e-11 75.9 48 72.9
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 7.6e-11 73.2 56 62.5
COL.COLO4_17527 Corchorus olitorius HOM05D000891 ORTHO05D008746 5.4e-09 67.0 133 33.8
Gohir.A12G191100 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.2e-08 65.9 172 26.7
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 1.6e-08 65.5 161 29.8
Cc02_g19560 Coffea canephora HOM05D003056 ORTHO05D003422 3.0e-07 61.2 140 29.3
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 3.0e-07 61.2 123 27.6
COL.COLO4_16640 Corchorus olitorius HOM05D000001 ORTHO05D000003 3.9e-07 60.8 191 25.1
Gohir.D12G193200 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.1e-07 60.5 193 26.4
Gorai.008G208000 Gossypium raimondii HOM05D000001 ORTHO05D000003 5.1e-07 60.5 193 26.4
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 1.9e-06 58.5 183 25.7
FAN07G1351 Fragaria x ananassa HOM05D003056 ORTHO05D003422 1.9e-06 58.5 165 24.8
EL10Ac7g16008 Beta vulgaris HOM05D002453 ORTHO05D008746 2.5e-06 58.2 123 30.1
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 4.3e-06 57.4 132 27.3
Cpa.g.sc77.27 Carica papaya HOM05D002453 ORTHO05D008746 5.6e-06 57.0 124 31.5
Cfa019553 Carpinus fangiana HOM05D002453 ORTHO05D008746 5.6e-06 57.0 132 27.3
SalBow8G2866 Salvia bowleyana HOM05D002453 ORTHO05D008746 5.6e-06 57.0 123 29.3
Sabra16G0186300 Salix brachista HOM05D003056 ORTHO05D003422 7.3e-06 56.6 134 27.6
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 9.6e-06 56.2 135 27.4
Potri.009G092100 Populus trichocarpa HOM05D003056 ORTHO05D003422 9.6e-06 56.2 134 27.6
TPR.G32181 Trifolium pratense HOM05D000001 ORTHO05D000003 9.6e-06 56.2 93 32.3


User provided reference genes

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