Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018460 Carpinus fangiana HOM05D003114 ORTHO05D003519 1.8e-24 115.2 61 100.0
CiPaw.16G052700 Carya illinoinensis HOM05D003114 ORTHO05D003519 1.5e-23 112.1 59 98.3
Haze_17610 Corylus avellana HOM05D003114 ORTHO05D003519 2.6e-23 111.3 59 96.6
CiPaw.15G069400 Carya illinoinensis HOM05D003114 ORTHO05D003519 3.4e-23 110.9 59 96.6
QL02p007130 Quercus lobata HOM05D003114 ORTHO05D003519 3.4e-23 110.9 59 96.6
GSVIVG01009623001 Vitis vinifera HOM05D003114 ORTHO05D003519 5.9e-23 110.2 59 96.6
Thecc.08G020200 Theobroma cacao HOM05D003114 ORTHO05D003519 7.6e-23 109.8 58 98.3
AL1G53790 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 1.0e-22 109.4 58 96.6
AT1G47550 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 1.0e-22 109.4 58 96.6
AT1G47560 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 1.0e-22 109.4 58 96.6
BcaC08g42958 Brassica carinata HOM05D003114 ORTHO05D003519 1.0e-22 109.4 58 96.6
C06p01990 Brassica napus HOM05D003114 ORTHO05D003519 1.0e-22 109.4 58 96.6
BolC6t35330H Brassica oleracea HOM05D003114 ORTHO05D003519 1.0e-22 109.4 58 96.6
TWI12G1412 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 1.0e-22 109.4 59 94.9
Ah.02g115920 Amaranthus hybridus HOM05D003114 ORTHO05D003519 1.3e-22 109.0 59 89.8
Eucgr.A00473 Eucalyptus grandis HOM05D003114 ORTHO05D003519 1.3e-22 109.0 59 94.9
COL.COLO4_26390 Corchorus olitorius HOM05D003114 ORTHO05D003519 1.7e-22 108.6 58 96.6
Gohir.A05G197600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.7e-22 108.6 58 96.6
Gohir.D05G200600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.7e-22 108.6 58 96.6
Gorai.009G205900 Gossypium raimondii HOM05D003114 ORTHO05D003519 1.7e-22 108.6 58 96.6
BcaB07g33828 Brassica carinata HOM05D003114 ORTHO05D003519 2.2e-22 108.2 58 94.8
A10p06300 Brassica napus HOM05D003114 ORTHO05D003519 2.2e-22 108.2 58 94.8
BraA10t42896Z Brassica rapa HOM05D003114 ORTHO05D003519 2.2e-22 108.2 58 94.8
CARHR037120 Cardamine hirsuta HOM05D003114 ORTHO05D003519 2.2e-22 108.2 58 93.1
Thhalv10011225m.g Eutrema salsugineum HOM05D003114 ORTHO05D003519 2.2e-22 108.2 58 94.8
Sp1g34560 Schrenkiella parvula HOM05D003114 ORTHO05D003519 2.2e-22 108.2 58 94.8
EL10Ac5g11704 Beta vulgaris HOM05D003114 ORTHO05D003519 2.9e-22 107.8 58 91.4
Carub.0001s3632 Capsella rubella HOM05D003114 ORTHO05D003519 2.9e-22 107.8 58 94.8
AUR62038454 Chenopodium quinoa HOM05D003114 ORTHO05D003519 2.9e-22 107.8 59 88.1
AUR62042151 Chenopodium quinoa HOM05D003114 ORTHO05D003519 3.8e-22 107.5 58 89.7
Ciclev10000230m.g Citrus clementina HOM05D003114 ORTHO05D003519 3.8e-22 107.5 59 93.2
Duzib041G0357 Durio zibethinus HOM05D003114 ORTHO05D003519 3.8e-22 107.5 59 93.2
Potri.014G039100 Populus trichocarpa HOM05D003114 ORTHO05D003519 3.8e-22 107.5 59 93.2
Manes.18G031300 Manihot esculenta HOM05D003114 ORTHO05D003519 5.0e-22 107.1 59 91.5
Aa31sc119G20 Aethionema arabicum HOM05D003114 ORTHO05D003519 6.5e-22 106.7 58 94.8
THA.LOC104803395 Tarenaya hassleriana HOM05D003114 ORTHO05D003519 8.5e-22 106.3 58 94.8
Duzib093G1140 Durio zibethinus HOM05D003114 ORTHO05D003519 1.1e-21 105.9 58 93.1
Potri.002G131400 Populus trichocarpa HOM05D003114 ORTHO05D003519 1.1e-21 105.9 59 91.5
Sabra02G0103300 Salix brachista HOM05D003114 ORTHO05D003519 1.4e-21 105.5 59 91.5
Cc10_g03540 Coffea canephora HOM05D003114 ORTHO05D003519 4.2e-21 104.0 60 91.7
Oeu015606.1 Olea europaea HOM05D003114 ORTHO05D003519 5.5e-21 103.6 60 91.7
Atru.chr13.574 Acer truncatum HOM05D003114 ORTHO05D003519 9.3e-21 102.8 58 91.4
SGA_v2.0_scaffold24G10278 Striga asiatica HOM05D003114 ORTHO05D003519 9.3e-21 102.8 60 91.7
TAR625G0620 Trochodendron aralioides HOM05D003114 ORTHO05D003519 9.3e-21 102.8 61 90.2
ClCG05G019260 Citrullus lanatus HOM05D003114 ORTHO05D003519 1.2e-20 102.4 60 91.7
MELO3C003892.2 Cucumis melo HOM05D003114 ORTHO05D003519 1.2e-20 102.4 60 91.7
CsaV3_3G044820 Cucumis sativus L. HOM05D003114 ORTHO05D003519 1.2e-20 102.4 60 91.7
TWI36G0061 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 1.2e-20 102.4 59 89.8
Dinv36027 Davidia involucrata HOM05D003114 ORTHO05D003519 1.6e-20 102.1 60 90.0
PSO170G0663 Papaver somniferum HOM05D003114 ORTHO05D003519 1.6e-20 102.1 60 88.3
PSO700G0395 Papaver somniferum HOM05D003114 ORTHO05D003519 1.6e-20 102.1 60 88.3
Prupe.1G385700 Prunus persica HOM05D003114 ORTHO05D003519 1.6e-20 102.1 58 89.7
SGA_v2.0_scaffold14G07047 Striga asiatica HOM05D003114 ORTHO05D003519 2.7e-20 101.3 61 90.2
CANSAT21G1752 Cannabis sativa HOM05D003114 ORTHO05D003519 3.6e-20 100.9 59 84.7
Dinv39367 Davidia involucrata HOM05D003114 ORTHO05D003519 3.6e-20 100.9 60 88.3
FvH4_2g40450 Fragaria vesca HOM05D003114 ORTHO05D003519 3.6e-20 100.9 58 87.9
FAN27G1632 Fragaria x ananassa HOM05D003114 ORTHO05D003519 3.6e-20 100.9 58 87.9
PGR031G3129 Punica granatum HOM05D003114 ORTHO05D003519 3.6e-20 100.9 59 89.8
RcHm_v2.0_Chr6g0300281 Rosa chinensis HOM05D003114 ORTHO05D003519 3.6e-20 100.9 58 87.9
SHI08196 Sapria himalayana HOM05D003114 ORTHO05D003519 3.6e-20 100.9 59 86.4
FAN15G2607 Fragaria x ananassa HOM05D003114 ORTHO05D003519 4.6e-20 100.5 58 87.9
Rhsim12G0123700 Rhododendron simsii HOM05D003114 ORTHO05D003519 4.6e-20 100.5 60 88.3
CANSAT25G1109 Cannabis sativa HOM05D003114 ORTHO05D003519 6.1e-20 100.1 59 84.7
Migut.E01196 Erythranthe guttata HOM05D003114 ORTHO05D003519 6.1e-20 100.1 60 90.0
Actinidia38026 Actinidia chinensis HOM05D003114 ORTHO05D003519 7.9e-20 99.8 60 86.7
Migut.C00667 Erythranthe guttata HOM05D003114 ORTHO05D003519 7.9e-20 99.8 60 88.3
Lalb_Chr08g0245771 Lupinus albus HOM05D003114 ORTHO05D003519 7.9e-20 99.8 59 84.7
Sed0016520 Sechium edule HOM05D003114 ORTHO05D003519 7.9e-20 99.8 60 88.3
TAR381G0473 Trochodendron aralioides HOM05D003114 ORTHO05D003519 7.9e-20 99.8 61 85.2
FAN20G2585 Fragaria x ananassa HOM05D003114 ORTHO05D003519 1.3e-19 99.0 58 86.2
Hma1.2p1_0260F.1_g104360 Hydrangea macrophylla HOM05D003114 ORTHO05D003519 2.3e-19 98.2 60 86.7
MD00G1038900 Malus domestica HOM05D003114 ORTHO05D003519 2.3e-19 98.2 58 86.2
Oeu009593.2 Olea europaea HOM05D003114 ORTHO05D003519 2.3e-19 98.2 60 85.0
Medtr3g111590 Medicago truncatula HOM05D003114 ORTHO05D003519 3.9e-19 97.4 59 83.1
Nn5g29441 Nelumbo nucifera HOM05D003114 ORTHO05D003519 3.9e-19 97.4 61 83.6
Ca_15530_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 5.1e-19 97.1 59 83.1
PGR083G1829 Punica granatum HOM05D003114 ORTHO05D003519 5.1e-19 97.1 60 86.7
MSTRG.22284 Avicennia marina HOM05D003114 ORTHO05D003519 6.7e-19 96.7 60 86.7
Lsat_1_v5_gn_1_19460 Lactuca sativa HOM05D003114 ORTHO05D003519 6.7e-19 96.7 60 81.7
Lj4C47G8 Lonicera japonica HOM05D003114 ORTHO05D003519 6.7e-19 96.7 61 82.0
Lj4C782G7 Lonicera japonica HOM05D003114 ORTHO05D003519 6.7e-19 96.7 60 85.0
Lj1g0027709 Lotus japonicus HOM05D003114 ORTHO05D003519 6.7e-19 96.7 59 83.1
HanXRQChr02g0045841 Helianthus annuus HOM05D003114 ORTHO05D003519 8.7e-19 96.3 60 81.7
Gohir.A05G260500 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.1e-18 95.9 57 86.0
SalBow8G4186 Salvia bowleyana HOM05D003114 ORTHO05D003519 1.1e-18 95.9 60 86.7
Migut.N02678 Erythranthe guttata HOM05D003114 ORTHO05D003519 1.9e-18 95.1 59 84.7
Solyc12g088990.2 Solanum lycopersicum HOM05D003114 ORTHO05D003519 1.9e-18 95.1 60 83.3
Sopen12g030890 Solanum pennellii HOM05D003114 ORTHO05D003519 1.9e-18 95.1 60 83.3
Sed0021383 Sechium edule HOM05D003114 ORTHO05D003519 2.5e-18 94.7 60 85.0
Gorai.009G274500 Gossypium raimondii HOM05D003114 ORTHO05D003519 5.7e-18 93.6 57 82.5
Nitab4.5_0000790g0060 Nicotiana tabacum HOM05D003114 ORTHO05D003519 5.7e-18 93.6 60 81.7
Lj5g0027441 Lotus japonicus HOM05D003114 ORTHO05D003519 7.4e-18 93.2 59 84.7
Nitab4.5_0000453g0100 Nicotiana tabacum HOM05D003114 ORTHO05D003519 7.4e-18 93.2 60 81.7
Psat0s3702g0080 Pisum sativum HOM05D003114 ORTHO05D003519 9.7e-18 92.8 59 79.7
VMungo0647G1300 Vigna mungo HOM05D003114 ORTHO05D003519 9.7e-18 92.8 59 83.1
ECA247G0467 Erigeron canadensis HOM05D003114 ORTHO05D003519 1.3e-17 92.4 60 75.0
MBI16_g36197_MAGBIO Magnolia biondii HOM05D003114 ORTHO05D003519 1.3e-17 92.4 61 80.3
CAN.G1002.6 Capsicum annuum HOM05D003114 ORTHO05D003519 1.6e-17 92.0 60 80.0
MSTRG.24311 Avicennia marina HOM05D003114 ORTHO05D003519 2.2e-17 91.7 60 81.7
Gohir.D05G262600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 2.2e-17 91.7 57 80.7
Phvul.001G017700 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 2.2e-17 91.7 58 84.5
TPR.G27771 Trifolium pratense HOM05D003114 ORTHO05D003519 2.2e-17 91.7 59 81.4
PSO541G3592 Papaver somniferum HOM05D003114 ORTHO05D003519 2.8e-17 91.3 60 83.3
PSO675G2900 Papaver somniferum HOM05D003114 ORTHO05D003519 3.7e-17 90.9 60 81.7
HPP92_006943 Vanilla planifolia HOM05D003114 ORTHO05D003519 3.7e-17 90.9 59 78.0
Ca_13324_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 4.8e-17 90.5 59 79.7
Glyma.04G034700 Glycine max HOM05D003114 ORTHO05D003519 4.8e-17 90.5 57 78.9
MSTRG.1310 Avicennia marina HOM05D003114 ORTHO05D003519 6.3e-17 90.1 59 81.4
Nitab4.5_0008571g0020 Nicotiana tabacum HOM05D003114 ORTHO05D003519 6.3e-17 90.1 60 83.3
Peaxi162Scf01340g00219 Petunia axillaris HOM05D003114 ORTHO05D003519 6.3e-17 90.1 60 83.3
Aqoxy6G00963 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 8.2e-17 89.7 60 80.0
Phvul.007G175100 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 1.1e-16 89.4 57 75.4
arahy.Tifrunner.gnm1.ann1.06HR6X Arachis hypogaea HOM05D003114 ORTHO05D003519 1.4e-16 89.0 61 82.0
arahy.Tifrunner.gnm1.ann1.I3NIKD Arachis hypogaea HOM05D003114 ORTHO05D003519 1.4e-16 89.0 61 82.0
CDE04G0236 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 1.4e-16 89.0 58 81.0
Peaxi162Scf00064g00324 Petunia axillaris HOM05D003114 ORTHO05D003519 1.8e-16 88.6 60 76.7
Psat6g010640 Pisum sativum HOM05D003114 ORTHO05D003519 1.8e-16 88.6 59 79.7
SalBow7G0889 Salvia bowleyana HOM05D003114 ORTHO05D003519 1.8e-16 88.6 59 78.0
Aqoxy5G01744 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 4.1e-16 87.4 60 78.3
Lalb_Chr22g0355341 Lupinus albus HOM05D003114 ORTHO05D003519 4.1e-16 87.4 59 78.0
arahy.Tifrunner.gnm1.ann1.E8QAF1 Arachis hypogaea HOM05D003114 ORTHO05D003519 5.3e-16 87.0 58 82.8
arahy.Tifrunner.gnm1.ann1.SVX42N Arachis hypogaea HOM05D003114 ORTHO05D003519 5.3e-16 87.0 58 82.8
Solyc07g025170.3 Solanum lycopersicum HOM05D003114 ORTHO05D003519 5.3e-16 87.0 60 80.0
Sopen07g012830 Solanum pennellii HOM05D003114 ORTHO05D003519 5.3e-16 87.0 60 80.0
Nitab4.5_0002940g0040 Nicotiana tabacum HOM05D003114 ORTHO05D003519 6.9e-16 86.7 60 80.0
MD08G1038000 Malus domestica HOM05D003114 ORTHO05D003519 1.2e-15 85.9 58 81.0
Phvul.009G055500 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 1.5e-15 85.5 57 73.7
CDE07G1354 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 2.6e-15 84.7 60 75.0
ECA232G2779 Erigeron canadensis HOM05D003114 ORTHO05D003519 2.6e-15 84.7 61 72.1
HanXRQChr16g0507961 Helianthus annuus HOM05D003114 ORTHO05D003519 3.4e-15 84.3 61 73.8
Dinv43318 Davidia involucrata HOM05D000086 ORTHO05D000983 5.9e-15 83.6 46 91.3
Lsat_1_v5_gn_4_122960 Lactuca sativa HOM05D003114 ORTHO05D003519 1.7e-14 82.0 61 72.1
Dinv42783 Davidia involucrata HOM05D003114 ORTHO05D003519 2.9e-14 81.3 45 91.1
Lalb_Chr24g0399101 Lupinus albus HOM05D003114 ORTHO05D003519 3.8e-14 80.9 59 72.9
Medtr1g021680 Medicago truncatula HOM05D003114 ORTHO05D003519 3.8e-14 80.9 60 75.0
DCAR_020951 Daucus carota HOM05D003114 ORTHO05D003519 5.0e-14 80.5 64 68.8
Glyma.09G114500 Glycine max HOM05D003114 ORTHO05D003519 5.0e-14 80.5 59 79.7
Glyma.17G246600 Glycine max HOM05D003114 ORTHO05D003519 5.0e-14 80.5 59 81.4
CDE06G1192 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 1.1e-13 79.3 58 74.1
Gohir.A11G224300 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.1e-13 79.3 71 62.0
Gohir.D11G228600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.1e-13 79.3 71 62.0
Gorai.007G245700 Gossypium raimondii HOM05D003114 ORTHO05D003519 1.1e-13 79.3 71 62.0
Nn6g32175 Nelumbo nucifera HOM05D003114 ORTHO05D003519 1.4e-13 79.0 61 73.8
ATR0733G144 Amborella trichopoda HOM05D003114 ORTHO05D003519 1.9e-13 78.6 58 67.2
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 9.4e-13 76.3 42 90.5
Lalb_Chr14g0368971 Lupinus albus HOM05D003114 ORTHO05D003519 4.6e-12 73.9 57 70.2
HanXRQChr09g0268391 Helianthus annuus HOM05D003114 ORTHO05D003519 6.1e-12 73.6 61 65.6
Os11g0276000 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 7.9e-12 73.2 63 61.9
HPP92_017781 Vanilla planifolia HOM05D003114 ORTHO05D003519 2.0e-10 68.6 59 61.0
unitig_899.g15621 Utricularia gibba HOM05D003114 ORTHO05D003519 1.3e-09 65.9 59 62.7
Zm00001eb051220 Zea mays HOM05D003114 ORTHO05D003519 1.5e-07 58.9 61 59.0
Zm00001eb168780 Zea mays HOM05D003114 ORTHO05D003519 4.5e-07 57.4 65 56.9
Os03g0625700 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 1.0e-06 56.2 61 57.4


User provided reference genes

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