Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018427 Carpinus fangiana HOM05D000042 ORTHO05D000980 4.5e-59 231.1 120 100.0
Haze_17996 Corylus avellana HOM05D000042 ORTHO05D000980 2.8e-37 158.7 129 70.5
Cfa018130 Carpinus fangiana HOM05D000042 ORTHO05D000980 9.1e-36 153.7 129 69.8
Cfa018426 Carpinus fangiana HOM05D000042 ORTHO05D000980 1.1e-33 146.7 130 66.9
CiPaw.15G031300 Carya illinoinensis HOM05D000042 ORTHO05D000980 5.5e-33 144.4 131 65.6
Haze_17636 Corylus avellana HOM05D000042 ORTHO05D000980 8.8e-31 137.1 129 65.1
QL09p032472 Quercus lobata HOM05D000042 ORTHO05D000980 1.7e-29 132.9 128 61.7
QL09p032453 Quercus lobata HOM05D000042 ORTHO05D000980 4.8e-29 131.3 128 61.7
Actinidia21276 Actinidia chinensis HOM05D000042 ORTHO05D000980 1.4e-28 129.8 129 58.9
CSS0013221 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 2.6e-27 125.6 129 58.1
Cpa.g.sc26.316 Carica papaya HOM05D000042 ORTHO05D000980 3.8e-26 121.7 129 51.9
ClCG11G016000 Citrullus lanatus HOM05D000042 ORTHO05D000980 1.5e-25 119.8 127 52.8
Manes.18G082400 Manihot esculenta HOM05D000042 ORTHO05D000980 1.5e-25 119.8 130 53.1
Actinidia15212 Actinidia chinensis HOM05D000042 ORTHO05D000980 1.9e-25 119.4 129 56.6
Manes.02G168500 Manihot esculenta HOM05D000042 ORTHO05D000980 2.5e-25 119.0 130 54.6
Sed0027083 Sechium edule HOM05D000042 ORTHO05D000980 2.5e-25 119.0 129 52.7
CSS0008613 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 3.2e-25 118.6 129 55.8
CsaV3_4G028010 Cucumis sativus L. HOM05D000042 ORTHO05D000980 4.2e-25 118.2 127 52.8
Potri.002G079000 Populus trichocarpa HOM05D000042 ORTHO05D000980 4.2e-25 118.2 130 54.6
Lj1g0009507 Lotus japonicus HOM05D000042 ORTHO05D000980 9.4e-25 117.1 129 52.7
MELO3C010515.2 Cucumis melo HOM05D000042 ORTHO05D000980 3.6e-24 115.2 127 52.0
GSVIVG01008806001 Vitis vinifera HOM05D000042 ORTHO05D000980 3.6e-24 115.2 131 53.4
Phvul.001G068200 Phaseolus vulgaris HOM05D000042 ORTHO05D000980 1.0e-23 113.6 129 51.9
VMungo0647G2314 Vigna mungo HOM05D000042 ORTHO05D000980 1.4e-23 113.2 129 51.9
Ca_12647_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000980 1.8e-23 112.8 129 51.2
Glyma.13G034100 Glycine max HOM05D000042 ORTHO05D000980 1.8e-23 112.8 129 51.2
Glyma.14G155100 Glycine max HOM05D000042 ORTHO05D000980 1.8e-23 112.8 129 51.9
Nitab4.5_0000418g0050 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.8e-23 112.8 130 52.3
Prupe.1G489400 Prunus persica HOM05D000042 ORTHO05D000980 4.0e-23 111.7 129 50.4
Nitab4.5_0005166g0020 Nicotiana tabacum HOM05D000042 ORTHO05D000980 5.2e-23 111.3 130 51.5
Thecc.08G133200 Theobroma cacao HOM05D000042 ORTHO05D000980 8.8e-23 110.5 129 51.2
Potri.005G182200 Populus trichocarpa HOM05D000042 ORTHO05D000980 1.2e-22 110.2 130 52.3
CSS0022940 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 2.0e-22 109.4 133 49.6
Aqoxy6G00308 Aquilegia oxysepala HOM05D000042 ORTHO05D000980 2.6e-22 109.0 124 51.6
PGR044G1215 Punica granatum HOM05D000042 ORTHO05D000980 3.3e-22 108.6 129 48.8
Zm00001eb349060 Zea mays HOM05D000042 ORTHO05D000980 4.4e-22 108.2 128 50.8
Solyc06g059970.4 Solanum lycopersicum HOM05D000042 ORTHO05D000980 5.7e-22 107.8 133 50.4
Sopen06g020070 Solanum pennellii HOM05D000042 ORTHO05D000980 5.7e-22 107.8 133 50.4
MBI18_g09769_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 9.7e-22 107.1 126 46.8
Duzib093G1499 Durio zibethinus HOM05D000042 ORTHO05D000980 1.3e-21 106.7 129 52.7
Hma1.2p1_1121F.1_g259270 Hydrangea macrophylla HOM05D000042 ORTHO05D000980 1.7e-21 106.3 133 52.6
Ciclev10002422m.g Citrus clementina HOM05D000042 ORTHO05D000980 2.2e-21 105.9 138 50.7
CAN.G531.15 Capsicum annuum HOM05D000042 ORTHO05D000980 3.7e-21 105.1 133 51.9
Gohir.A02G070800 Gossypium hirsutum HOM05D000042 ORTHO05D000980 4.8e-21 104.8 129 49.6
TAR625G0222 Trochodendron aralioides HOM05D000042 ORTHO05D000980 4.8e-21 104.8 126 48.4
Gohir.D02G078000 Gossypium hirsutum HOM05D000042 ORTHO05D000980 6.3e-21 104.4 129 49.6
Gorai.005G087600 Gossypium raimondii HOM05D000042 ORTHO05D000980 6.3e-21 104.4 129 49.6
Hma1.2p1_0880F.1_g231800 Hydrangea macrophylla HOM05D000042 ORTHO05D000980 6.3e-21 104.4 132 54.5
Gohir.A01G190300 Gossypium hirsutum HOM05D000042 ORTHO05D000980 8.3e-21 104.0 129 50.4
Os05g0423400 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D000980 8.3e-21 104.0 126 48.4
Zm00001eb349070 Zea mays HOM05D000042 ORTHO05D000980 1.8e-20 102.8 127 48.0
Nn1g08955 Nelumbo nucifera HOM05D000042 ORTHO05D000980 2.4e-20 102.4 125 51.2
Nitab4.5_0004346g0030 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.2e-19 100.1 129 46.5
SHI09220 Sapria himalayana HOM05D000042 ORTHO05D000980 1.6e-19 99.8 130 51.5
MSTRG.25848 Avicennia marina HOM05D000042 ORTHO05D000980 2.0e-19 99.4 130 50.0
Os01g0883100 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D000980 2.7e-19 99.0 126 48.4
Cc10_g13750 Coffea canephora HOM05D000042 ORTHO05D000980 4.5e-19 98.2 116 54.3
Gorai.002G223100 Gossypium raimondii HOM05D000042 ORTHO05D000980 4.5e-19 98.2 146 45.9
Nitab4.5_0000508g0030 Nicotiana tabacum HOM05D000042 ORTHO05D000980 1.3e-18 96.7 129 45.7
SalBow4G1774 Salvia bowleyana HOM05D000042 ORTHO05D000980 2.2e-18 95.9 131 48.1
Migut.A00326 Erythranthe guttata HOM05D000042 ORTHO05D000980 1.1e-17 93.6 130 48.5
HPP92_005663 Vanilla planifolia HOM05D000042 ORTHO05D000980 1.5e-17 93.2 116 48.3
TWI34G0794 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 1.9e-17 92.8 130 48.5
THA.LOC104808253 Tarenaya hassleriana HOM05D000042 ORTHO05D000980 3.2e-17 92.0 133 44.4
Atru.chr13.1570 Acer truncatum HOM05D000042 ORTHO05D000980 1.2e-16 90.1 140 47.1
Oeu020103.1 Olea europaea HOM05D000042 ORTHO05D000980 1.6e-16 89.7 130 46.2
Zm00001eb145660 Zea mays HOM05D000042 ORTHO05D000980 1.6e-16 89.7 126 45.2
SGA_v2.0_scaffold147G36311 Striga asiatica HOM05D000042 ORTHO05D000980 2.1e-16 89.4 136 44.1
Peaxi162Scf00591g00074 Petunia axillaris HOM05D000042 ORTHO05D000980 2.7e-16 89.0 106 51.9
Ciclev10002471m.g Citrus clementina HOM05D000042 ORTHO05D000980 3.6e-16 88.6 134 49.3
CAN.G348.10 Capsicum annuum HOM05D000042 ORTHO05D000980 8.0e-16 87.4 132 43.9
CANSAT64G0749 Cannabis sativa HOM05D000042 ORTHO05D000980 1.8e-15 86.3 130 46.2
Peaxi162Scf00922g00026 Petunia axillaris HOM05D000042 ORTHO05D000980 1.8e-15 86.3 143 42.7
Solyc08g067230.4 Solanum lycopersicum HOM05D000042 ORTHO05D000980 2.3e-15 85.9 130 42.3
Eucgr.E01006 Eucalyptus grandis HOM05D000042 ORTHO05D000980 4.0e-15 85.1 130 43.8
Sopen08g021160 Solanum pennellii HOM05D000042 ORTHO05D000980 5.2e-15 84.7 130 41.5
HanXRQChr02g0040221 Helianthus annuus HOM05D000042 ORTHO05D000980 8.8e-15 84.0 125 43.2
Thhalv10014683m.g Eutrema salsugineum HOM05D000042 ORTHO05D000980 1.2e-14 83.6 128 43.0
ECA236G4655 Erigeron canadensis HOM05D000042 ORTHO05D000980 2.6e-14 82.4 128 40.6
HanXRQChr02g0045511 Helianthus annuus HOM05D000042 ORTHO05D000980 2.6e-14 82.4 129 41.9
CANSAT64G2469 Cannabis sativa HOM05D000042 ORTHO05D000980 4.4e-14 81.6 130 45.4
Sp6g24170 Schrenkiella parvula HOM05D000042 ORTHO05D000980 5.7e-14 81.3 128 42.2
BcaB05g22859 Brassica carinata HOM05D000042 ORTHO05D000980 7.5e-14 80.9 128 42.2
CARHR192590 Cardamine hirsuta HOM05D000042 ORTHO05D000980 7.5e-14 80.9 128 40.6
PGSC0003DMG401007392 Solanum tuberosum HOM05D000042 ORTHO05D000980 7.5e-14 80.9 134 40.3
AT5G20240 Arabidopsis thaliana HOM05D000042 ORTHO05D000980 1.3e-13 80.1 128 41.4
RcHm_v2.0_Chr6g0296731 Rosa chinensis HOM05D000042 ORTHO05D000980 1.3e-13 80.1 129 40.3
HanXRQChr12g0358781 Helianthus annuus HOM05D000042 ORTHO05D000980 2.2e-13 79.3 129 41.1
RcHm_v2.0_Chr6g0296721 Rosa chinensis HOM05D000042 ORTHO05D000980 8.3e-13 77.4 126 43.7
TAR628G0493 Trochodendron aralioides HOM05D000042 ORTHO05D000980 8.3e-13 77.4 135 40.0
Carub.0006s1863 Capsella rubella HOM05D000042 ORTHO05D000980 1.8e-12 76.3 128 39.8
ECA236G2126 Erigeron canadensis HOM05D000042 ORTHO05D000980 7.0e-12 74.3 129 38.0
A03p09950 Brassica napus HOM05D000042 ORTHO05D000980 1.6e-11 73.2 128 41.4
C03p11520 Brassica napus HOM05D000042 ORTHO05D000980 1.6e-11 73.2 128 41.4
BolC3t13624H Brassica oleracea HOM05D000042 ORTHO05D000980 1.6e-11 73.2 128 41.4
THA.LOC104815100 Tarenaya hassleriana HOM05D000042 ORTHO05D000980 2.0e-11 72.8 128 39.1
Glyma.04G245500 Glycine max HOM05D000042 ORTHO05D000980 2.7e-11 72.4 82 51.2
Rhsim11G0071800 Rhododendron simsii HOM05D000042 ORTHO05D000980 3.5e-11 72.0 108 42.6
BcaC04g19414 Brassica carinata HOM05D000042 ORTHO05D000980 5.9e-11 71.2 128 39.8
A02p06120 Brassica napus HOM05D000042 ORTHO05D000980 5.9e-11 71.2 138 39.1
C09p55960 Brassica napus HOM05D000042 ORTHO05D000980 5.9e-11 71.2 128 39.8
BolC9t58465H Brassica oleracea HOM05D000042 ORTHO05D000980 5.9e-11 71.2 128 39.8
Glyma.06G117600 Glycine max HOM05D000042 ORTHO05D000980 5.9e-11 71.2 82 50.0
Sc26g0002920 Simmondsia chinensis HOM05D000042 ORTHO05D000980 5.9e-11 71.2 131 39.7
Aa31LG1G14390 Aethionema arabicum HOM05D000042 ORTHO05D000980 7.7e-11 70.9 128 37.5
BcaC03g13745 Brassica carinata HOM05D000042 ORTHO05D000980 7.7e-11 70.9 131 39.7
A10p19700 Brassica napus HOM05D000042 ORTHO05D000980 1.0e-10 70.5 129 40.3
FAN20G0851 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.0e-10 70.5 126 39.7
BraA02t05562Z Brassica rapa HOM05D000042 ORTHO05D000980 1.7e-10 69.7 128 40.6
FvH4_2g27860 Fragaria vesca HOM05D000042 ORTHO05D000980 2.3e-10 69.3 125 40.0
FAN15G0410 Fragaria x ananassa HOM05D000042 ORTHO05D000980 2.3e-10 69.3 138 37.7
Psat5g084680 Pisum sativum HOM05D000042 ORTHO05D000980 2.3e-10 69.3 82 48.8
ATR1145G055 Amborella trichopoda HOM05D000042 ORTHO05D000980 2.9e-10 68.9 132 37.1
FvH4_2g27870 Fragaria vesca HOM05D000042 ORTHO05D000980 2.9e-10 68.9 126 38.1
Medtr3g088615 Medicago truncatula HOM05D000042 ORTHO05D000980 3.8e-10 68.6 82 47.6
Phvul.009G130000 Phaseolus vulgaris HOM05D000042 ORTHO05D000980 3.8e-10 68.6 82 47.6
VMungo1309G1360 Vigna mungo HOM05D000042 ORTHO05D000980 3.8e-10 68.6 82 47.6
DCAR_014369 Daucus carota HOM05D000042 ORTHO05D000980 5.0e-10 68.2 128 39.1
TPR.G28821 Trifolium pratense HOM05D000042 ORTHO05D000980 6.6e-10 67.8 82 47.6
TWI60G1129 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 6.6e-10 67.8 90 50.0
Lalb_Chr08g0241091 Lupinus albus HOM05D000042 ORTHO05D000980 8.6e-10 67.4 86 46.5
arahy.Tifrunner.gnm1.ann1.NKL1UU Arachis hypogaea HOM05D000042 ORTHO05D000980 1.1e-09 67.0 92 46.7
MBI03_g31894_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 1.1e-09 67.0 125 38.4
MBI03_g39655_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 1.1e-09 67.0 125 38.4
Lalb_Chr08g0241111 Lupinus albus HOM05D000042 ORTHO05D000980 1.5e-09 66.6 92 44.6
AUR62007716 Chenopodium quinoa HOM05D000042 ORTHO05D000980 1.9e-09 66.2 130 39.2
arahy.Tifrunner.gnm1.ann1.78PTZY Arachis hypogaea HOM05D000042 ORTHO05D000980 2.5e-09 65.9 92 46.7
Ca_16609_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000980 3.3e-09 65.5 82 46.3
DCAR_014370 Daucus carota HOM05D000042 ORTHO05D000980 7.2e-09 64.3 104 37.5
BolC2t07028H Brassica oleracea HOM05D000042 ORTHO05D000980 9.5e-09 63.9 147 35.4
Eucgr.E01007 Eucalyptus grandis HOM05D000042 ORTHO05D000980 1.6e-08 63.2 129 36.4
FAN27G1355 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.6e-08 63.2 137 35.8
Medtr1g029670 Medicago truncatula HOM05D000042 ORTHO05D000980 1.6e-08 63.2 84 39.3
Lsat_1_v5_gn_1_7541 Lactuca sativa HOM05D000042 ORTHO05D000980 2.1e-08 62.8 84 47.6
Haze_17637 Corylus avellana HOM05D000042 ORTHO05D000980 4.7e-08 61.6 97 47.4
FAN15G2212 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.0e-07 60.5 127 39.4
PSO170G2512 Papaver somniferum HOM05D000042 ORTHO05D000980 1.0e-07 60.5 132 38.6
Oeu030210.2 Olea europaea HOM05D000042 ORTHO05D000980 1.4e-07 60.1 122 38.5
ATR0584G184 Amborella trichopoda HOM05D000042 ORTHO05D000980 1.8e-07 59.7 121 37.2
PSO528G0018 Papaver somniferum HOM05D000042 ORTHO05D000980 1.8e-07 59.7 132 38.6
FAN20G2638 Fragaria x ananassa HOM05D000042 ORTHO05D000980 3.0e-07 58.9 127 39.4
arahy.Tifrunner.gnm1.ann1.QQ4618 Arachis hypogaea HOM05D000042 ORTHO05D000980 4.0e-07 58.5 80 48.8
Dinv14692 Davidia involucrata HOM05D000042 ORTHO05D000980 4.0e-07 58.5 64 50.0
TPR.G37973 Trifolium pratense HOM05D000042 ORTHO05D000980 1.2e-06 57.0 82 40.2
BcaB08g36537 Brassica carinata HOM05D000527 ORTHO05D000559 4.4e-06 55.1 102 36.3
Gohir.D01G179500 Gossypium hirsutum HOM05D000042 ORTHO05D000980 5.7e-06 54.7 80 47.5


User provided reference genes

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