Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.5e-175 619.4 312 100.0
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 1.1e-130 470.3 242 97.9
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 8.8e-115 417.5 238 88.7
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 3.3e-114 415.6 241 87.1
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 3.6e-108 395.6 243 82.3
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 1.1e-106 390.6 245 81.2
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 7.4e-106 387.9 248 79.8
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 8.2e-105 384.4 243 81.1
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.1e-104 384.0 300 68.7
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 1.8e-104 383.3 245 80.0
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 7.0e-104 381.3 243 79.8
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 7.0e-104 381.3 243 79.8
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 2.6e-103 379.4 243 81.1
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 2.6e-103 379.4 315 65.1
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 5.0e-102 375.2 244 78.7
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 8.5e-102 374.4 238 80.3
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.5e-101 373.6 221 86.0
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 1.5e-101 373.6 233 82.4
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.2e-101 372.1 243 78.6
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 9.4e-101 370.9 259 74.9
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 9.4e-101 370.9 243 79.0
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 2.1e-100 369.8 244 76.6
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 2.7e-100 369.4 244 78.7
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.0e-99 367.5 244 76.2
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.8e-99 366.7 244 76.2
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.8e-99 366.7 244 76.2
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 2.3e-99 366.3 239 79.1
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.0e-99 365.5 244 75.8
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 4.0e-99 365.5 238 79.0
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 8.8e-99 364.4 249 77.5
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.5e-98 363.6 244 75.0
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.5e-98 363.6 253 75.5
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 9.7e-98 360.9 243 76.5
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 8.2e-97 357.8 274 69.0
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.4e-96 357.1 238 76.5
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 2.4e-96 356.3 235 78.3
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 3.1e-96 355.9 256 75.0
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 3.1e-96 355.9 235 77.0
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 3.1e-96 355.9 244 74.6
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 3.1e-96 355.9 241 75.9
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 5.3e-96 355.1 241 75.9
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 7.0e-96 354.8 244 75.4
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 7.0e-96 354.8 244 75.4
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 7.0e-96 354.8 238 75.6
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 7.0e-96 354.8 227 81.9
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 1.2e-95 354.0 229 78.6
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.6e-95 353.6 243 74.5
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 2.0e-95 353.2 233 76.4
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 2.7e-95 352.8 238 74.8
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 3.5e-95 352.4 233 75.5
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 5.9e-95 351.7 237 73.8
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 5.9e-95 351.7 241 74.3
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 7.7e-95 351.3 237 75.5
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 7.7e-95 351.3 241 74.7
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.0e-94 350.9 241 74.7
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 1.0e-94 350.9 246 72.0
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.0e-94 350.9 233 76.4
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 1.3e-94 350.5 249 73.1
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.7e-94 350.1 213 82.2
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.7e-94 350.1 233 76.8
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 3.8e-94 349.0 238 73.1
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 3.8e-94 349.0 246 71.1
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 5.0e-94 348.6 243 72.8
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 6.5e-94 348.2 238 73.1
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 8.5e-94 347.8 222 80.2
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 8.5e-94 347.8 229 78.2
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.1e-93 347.4 227 79.7
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.5e-93 347.1 230 77.0
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 1.5e-93 347.1 229 77.7
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 1.5e-93 347.1 255 71.4
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 2.5e-93 346.3 235 76.2
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 2.5e-93 346.3 222 80.2
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 2.5e-93 346.3 218 80.3
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 2.5e-93 346.3 272 67.3
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 3.2e-93 345.9 222 80.2
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 4.2e-93 345.5 234 75.6
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 5.5e-93 345.1 208 81.7
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 5.5e-93 345.1 211 82.5
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 9.4e-93 344.4 222 79.7
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 9.4e-93 344.4 222 79.3
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 9.4e-93 344.4 244 74.6
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.2e-92 344.0 208 83.2
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.6e-92 343.6 246 74.0
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 2.1e-92 343.2 222 78.8
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 2.1e-92 343.2 247 73.3
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 2.7e-92 342.8 250 73.6
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 4.7e-92 342.0 222 78.8
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 4.7e-92 342.0 232 76.3
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 6.1e-92 341.7 206 83.5
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.0e-91 340.9 254 70.5
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.4e-91 340.5 222 79.3
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.8e-91 340.1 223 78.0
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 3.0e-91 339.3 222 78.8
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 3.0e-91 339.3 238 71.8
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 4.0e-91 339.0 233 73.0
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 6.8e-91 338.2 222 77.9
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.6e-90 336.3 264 68.2
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 9.1e-88 327.8 223 75.8
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 2.0e-87 326.6 319 59.2
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 7.7e-87 324.7 219 76.7
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 1.0e-86 324.3 204 80.4
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 2.2e-86 323.2 236 70.3
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 4.2e-85 318.9 189 84.7
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 4.5e-79 298.9 166 91.0
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 5.6e-77 292.0 211 74.9
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 4.4e-74 282.3 211 71.6
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 7.5e-74 281.6 226 65.0
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 1.1e-72 277.7 230 63.0
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 8.6e-70 268.1 222 67.6
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 2.0e-66 256.9 196 64.3
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 1.3e-62 244.2 144 81.9
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.5e-61 240.7 188 62.2
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 7.3e-53 211.8 156 64.1
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 5.2e-51 205.7 193 53.4
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 6.8e-51 205.3 233 47.2
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 6.8e-51 205.3 202 52.5
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.6e-47 194.1 117 86.3
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 1.1e-45 188.0 178 51.1
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 1.9e-45 187.2 180 50.6
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 6.0e-39 165.6 144 63.9
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 3.4e-34 149.8 159 56.6
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 9.9e-26 121.7 142 40.1
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 4.2e-24 116.3 102 63.7
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 4.6e-23 112.8 65 86.2
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 3.1e-19 100.1 89 56.2
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.2e-17 94.0 53 86.8


User provided reference genes

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