Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 3.3e-156 555.1 297 100.0
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 1.3e-152 543.1 297 98.0
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 4.2e-106 388.7 301 70.4
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.7e-104 383.3 302 71.5
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 5.6e-103 378.3 293 71.3
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 9.6e-103 377.5 301 71.4
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 8.1e-102 374.4 299 72.6
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.4e-101 373.6 296 70.6
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 8.4e-99 364.4 303 69.3
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 7.1e-98 361.3 302 68.5
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 2.7e-97 359.4 298 68.1
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 2.7e-97 359.4 298 67.8
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 5.1e-96 355.1 290 68.6
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.1e-95 354.0 300 68.3
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.5e-95 353.6 302 67.5
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 2.8e-94 349.4 300 66.3
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.4e-93 347.1 301 67.4
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.4e-93 347.1 301 67.4
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 9.0e-93 344.4 306 66.0
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.4e-92 342.4 305 66.2
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.2e-91 339.7 299 65.9
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.1e-90 337.4 283 66.8
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.4e-90 337.0 274 67.9
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 7.1e-90 334.7 302 64.2
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.1e-89 333.2 283 66.1
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 2.7e-89 332.8 288 65.6
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.0e-88 330.9 299 65.9
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.8e-88 330.1 296 65.9
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.8e-88 330.1 284 65.1
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.3e-88 329.7 289 66.4
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 5.1e-88 328.6 284 65.8
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.9e-87 326.6 300 63.0
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 7.4e-87 324.7 302 64.6
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 7.4e-87 324.7 276 67.0
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.3e-86 323.9 286 66.8
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 2.8e-86 322.8 301 65.4
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 6.2e-86 321.6 296 64.5
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 6.2e-86 321.6 305 62.6
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 8.1e-86 321.2 288 64.6
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 1.4e-85 320.5 302 62.6
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 3.1e-85 319.3 301 64.5
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 6.9e-85 318.2 314 61.1
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.0e-84 316.6 286 63.6
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 2.6e-84 316.2 300 62.7
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 7.6e-84 314.7 286 63.3
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 7.6e-84 314.7 290 65.2
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 1.3e-83 313.9 297 62.3
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.7e-83 313.5 311 58.8
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 2.2e-83 313.2 289 65.1
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.9e-83 312.0 300 62.3
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 4.9e-83 312.0 306 61.4
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 6.4e-83 311.6 289 61.6
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.4e-82 310.5 295 61.4
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.4e-82 310.5 264 67.0
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 3.2e-82 309.3 284 64.1
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 3.2e-82 309.3 299 62.2
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 5.5e-82 308.5 301 60.1
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 7.1e-82 308.1 294 62.2
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.1e-82 308.1 292 64.4
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 9.3e-82 307.8 291 64.6
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-81 307.4 296 61.5
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.2e-81 307.4 292 61.3
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.6e-81 307.0 294 62.2
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 1.6e-81 307.0 261 65.5
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 1.6e-81 307.0 282 64.5
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.7e-81 306.2 287 64.1
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.7e-81 306.2 299 61.5
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 4.6e-81 305.4 263 65.8
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 6.0e-81 305.1 296 61.8
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.9e-81 304.7 290 64.1
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 7.9e-81 304.7 302 59.9
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 7.9e-81 304.7 302 59.9
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.0e-80 304.3 258 64.7
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 1.3e-80 303.9 295 61.7
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 1.3e-80 303.9 290 63.8
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 3.0e-80 302.8 258 66.3
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 3.9e-80 302.4 263 63.9
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 5.1e-80 302.0 245 70.2
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 6.7e-80 301.6 300 60.3
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.7e-80 301.2 300 60.3
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.1e-79 300.8 255 66.3
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.5e-79 300.4 298 63.1
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 3.3e-79 299.3 303 59.4
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 4.3e-79 298.9 294 60.5
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.4e-79 298.1 246 66.7
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 9.6e-79 297.7 294 60.5
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.8e-78 296.2 288 60.8
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 6.2e-78 295.0 297 61.6
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.1e-77 294.3 285 61.1
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.1e-77 294.3 290 61.0
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.4e-77 293.9 278 61.2
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.4e-77 293.9 296 60.8
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.0e-77 292.4 285 60.4
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.0e-77 292.4 285 60.4
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 9.0e-77 291.2 291 60.5
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 9.0e-77 291.2 291 60.5
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 9.0e-77 291.2 291 60.5
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.2e-76 290.8 285 60.4
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 2.6e-76 289.7 263 64.6
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.3e-75 287.3 306 56.5
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 4.9e-75 285.4 256 64.1
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 6.5e-75 285.0 306 54.9
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 8.4e-75 284.6 301 59.1
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 2.5e-74 283.1 294 56.8
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 3.2e-74 282.7 285 58.2
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 3.2e-74 282.7 309 57.6
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 4.2e-74 282.3 263 63.5
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 9.3e-74 281.2 266 60.5
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 1.3e-72 277.3 290 57.9
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 2.3e-72 276.6 261 62.1
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 3.3e-71 272.7 240 64.6
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.3e-70 270.8 291 55.7
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 4.8e-70 268.9 278 58.6
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 2.6e-68 263.1 281 57.7
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.7e-67 260.4 294 55.8
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.7e-67 260.4 280 55.4
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 6.5e-67 258.5 294 55.4
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.9e-66 256.9 288 55.9
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 2.7e-65 253.1 296 54.4
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 3.6e-65 252.7 251 58.2
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.1e-65 251.9 291 53.3
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.8e-64 250.4 295 53.9
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.9e-64 249.2 301 52.8
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.1e-63 247.7 293 53.6
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 5.7e-63 245.4 290 54.5
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-61 240.7 191 67.5
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.5e-60 237.3 298 52.0
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 2.2e-59 233.4 260 54.6
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.8e-59 232.6 282 54.3
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.1e-58 231.1 294 51.4
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 2.5e-58 229.9 211 65.4
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.5e-58 228.8 275 52.0
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 6.1e-57 225.3 233 55.8
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 3.0e-56 223.0 247 55.5
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.3e-54 217.6 210 61.0
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 2.2e-54 216.9 271 49.4
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.3e-51 207.6 268 50.7
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.6e-49 199.5 286 48.6
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 3.7e-46 189.5 315 46.7
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 2.4e-45 186.8 278 45.7
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 2.6e-44 183.3 168 66.1
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 5.5e-42 175.6 277 43.3
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 5.5e-42 175.6 155 61.9
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 9.4e-42 174.9 183 61.2
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 1.2e-41 174.5 167 59.9
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.3e-40 170.2 150 64.7
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 2.3e-40 170.2 160 65.0
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 2.3e-40 170.2 160 65.0
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.2e-39 167.9 283 42.4
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.6e-39 166.8 162 59.3
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.5e-39 165.2 187 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 9.7e-39 164.9 283 40.6
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 1.7e-38 164.1 148 58.1
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 1.8e-37 160.6 249 40.2
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 3.5e-36 156.4 288 40.3
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.0e-35 154.8 186 52.7
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 6.5e-35 152.1 295 38.3
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 1.5e-34 151.0 262 40.1
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 3.2e-34 149.8 190 53.2
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 7.2e-34 148.7 139 54.7
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 1.3e-30 137.9 250 40.8
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 6.3e-30 135.6 206 46.1
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.6e-27 125.6 154 54.5
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.7e-25 119.4 163 50.9
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.4e-24 117.9 80 75.0
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.7e-22 110.9 195 43.1
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.4e-21 107.1 72 76.4
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.5e-20 102.8 156 45.5
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 7.8e-20 102.1 83 73.5
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 8.6e-19 98.6 154 47.4
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.9e-18 97.4 297 32.0
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.5e-18 97.1 112 57.1
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.6e-17 94.4 74 64.9
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 3.1e-16 90.1 277 33.2
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.0e-16 89.7 149 45.6
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 8.3e-14 82.0 92 55.4
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 2.4e-13 80.5 59 71.2
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 3.2e-13 80.1 48 83.3
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 4.7e-09 66.2 60 56.7
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 1.1e-08 65.1 101 43.6
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 6.8e-08 62.4 60 65.0


User provided reference genes

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