Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018122 Carpinus fangiana HOM05D001090 ORTHO05D002687 1.5e-310 1068.5 505 100.0
QL09p032695 Quercus lobata HOM05D001090 ORTHO05D002687 1.5e-76 291.2 165 87.9
CiPaw.15G032300 Carya illinoinensis HOM05D001090 ORTHO05D002687 1.4e-69 268.1 165 78.8
Gohir.D03G069000 Gossypium hirsutum HOM05D001090 ORTHO05D002687 1.1e-66 258.5 175 72.6
Gorai.013G107400 Gossypium raimondii HOM05D001090 ORTHO05D002687 1.1e-66 258.5 175 72.6
Potri.002G078000 Populus trichocarpa HOM05D001090 ORTHO05D002687 1.1e-66 258.5 176 72.2
Actinidia15217 Actinidia chinensis HOM05D001090 ORTHO05D002687 2.5e-66 257.3 163 76.1
Manes.02G167701 Manihot esculenta HOM05D001090 ORTHO05D002687 3.2e-66 256.9 175 75.4
Manes.02G167501 Manihot esculenta HOM05D001090 ORTHO05D002687 4.2e-66 256.5 175 74.9
Thecc.08G132400 Theobroma cacao HOM05D001090 ORTHO05D002687 5.5e-66 256.1 175 72.6
GSVIVG01008813001 Vitis vinifera HOM05D001090 ORTHO05D002687 9.3e-66 255.4 173 71.7
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 2.1e-65 254.2 165 75.8
COL.COLO4_09042 Corchorus olitorius HOM05D001090 ORTHO05D002687 2.7e-65 253.8 165 74.5
Gohir.A02G110100 Gossypium hirsutum HOM05D001090 ORTHO05D002687 2.7e-65 253.8 175 71.4
A08p28880 Brassica napus HOM05D001090 ORTHO05D002687 3.5e-65 253.4 165 73.3
Prupe.1G490400 Prunus persica HOM05D001090 ORTHO05D002687 3.5e-65 253.4 175 71.4
Sp1g19170 Schrenkiella parvula HOM05D001090 ORTHO05D002687 4.6e-65 253.1 165 73.9
CSS0005695 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 6.0e-65 252.7 173 71.1
C08p20970 Brassica napus HOM05D001090 ORTHO05D002687 1.8e-64 251.1 165 72.7
BolC8t49734H Brassica oleracea HOM05D001090 ORTHO05D002687 1.8e-64 251.1 165 72.7
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 1.8e-64 251.1 165 73.3
RcHm_v2.0_Chr6g0296621 Rosa chinensis HOM05D001090 ORTHO05D002687 1.8e-64 251.1 175 71.4
CSS0001559 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 2.3e-64 250.8 173 69.9
CSS0022044 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 2.3e-64 250.8 173 69.9
AL1G34790 Arabidopsis lyrata HOM05D001090 ORTHO05D002687 6.7e-64 249.2 165 72.1
TAR628G0124 Trochodendron aralioides HOM05D001090 ORTHO05D002687 1.5e-63 248.1 175 71.4
Carub.0001s2107 Capsella rubella HOM05D001090 ORTHO05D002687 1.9e-63 247.7 165 72.1
Aa31LG7G5620 Aethionema arabicum HOM05D001090 ORTHO05D002687 7.4e-63 245.7 165 72.1
VMungo1309G1000 Vigna mungo HOM05D001090 ORTHO05D002687 7.4e-63 245.7 174 68.4
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 9.6e-63 245.4 165 72.1
Lalb_Chr08g0241141 Lupinus albus HOM05D001090 ORTHO05D002687 9.6e-63 245.4 174 69.0
Duzib093G1991 Durio zibethinus HOM05D001090 ORTHO05D002687 1.6e-62 244.6 181 68.5
Glyma.06G116900 Glycine max HOM05D001090 ORTHO05D002687 1.6e-62 244.6 174 67.8
Nn1g08972 Nelumbo nucifera HOM05D001090 ORTHO05D002687 2.8e-62 243.8 163 73.6
Lj1g0001372 Lotus japonicus HOM05D001090 ORTHO05D002687 3.7e-62 243.4 174 69.0
TPR.G13471 Trifolium pratense HOM05D001090 ORTHO05D002687 3.7e-62 243.4 164 72.0
Ciclev10000116m.g Citrus clementina HOM05D001090 ORTHO05D002687 4.8e-62 243.0 175 69.7
MBI03_g28478_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D002687 4.8e-62 243.0 173 68.8
Phvul.009G129400 Phaseolus vulgaris HOM05D001090 ORTHO05D002687 8.2e-62 242.3 174 67.2
PGR042G2877 Punica granatum HOM05D001090 ORTHO05D002687 8.2e-62 242.3 176 67.0
BraA08t34819Z Brassica rapa HOM05D001090 ORTHO05D002687 1.1e-61 241.9 165 70.3
arahy.Tifrunner.gnm1.ann1.9Y6HC5 Arachis hypogaea HOM05D001090 ORTHO05D002687 1.8e-61 241.1 174 68.4
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 2.4e-61 240.7 165 70.3
FvH4_2g27750 Fragaria vesca HOM05D001090 ORTHO05D002687 3.1e-61 240.4 175 68.6
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 3.1e-61 240.4 175 68.6
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 4.1e-61 240.0 175 68.0
Sabra02G0061200 Salix brachista HOM05D001090 ORTHO05D002687 4.1e-61 240.0 187 65.2
Medtr3g088555 Medicago truncatula HOM05D001090 ORTHO05D002687 6.9e-61 239.2 164 70.1
Ca_16604_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 1.5e-60 238.0 164 69.5
Eucgr.F03833 Eucalyptus grandis HOM05D001090 ORTHO05D002687 1.5e-60 238.0 174 68.4
MD00G1100600 Malus domestica HOM05D001090 ORTHO05D002687 1.5e-60 238.0 166 71.1
Cc10_g12680 Coffea canephora HOM05D001090 ORTHO05D002687 2.0e-60 237.7 175 68.6
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.0e-60 237.7 175 68.0
arahy.Tifrunner.gnm1.ann1.V5YSST Arachis hypogaea HOM05D001090 ORTHO05D002687 2.6e-60 237.3 174 67.8
CANSAT21G2061 Cannabis sativa HOM05D001090 ORTHO05D002687 2.6e-60 237.3 176 68.8
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 4.5e-60 236.5 175 67.4
THA.LOC104812087 Tarenaya hassleriana HOM05D001090 ORTHO05D002687 1.0e-59 235.3 175 67.4
Sed0013290 Sechium edule HOM05D001090 ORTHO05D002687 1.3e-59 235.0 165 70.3
MELO3C016326.2 Cucumis melo HOM05D001090 ORTHO05D002687 1.7e-59 234.6 175 67.4
CsaV3_4G006230 Cucumis sativus L. HOM05D001090 ORTHO05D002687 1.7e-59 234.6 175 67.4
SGA_v2.0_scaffold28G11973 Striga asiatica HOM05D001090 ORTHO05D002687 2.9e-59 233.8 163 69.9
Lsat_1_v5_gn_4_134081 Lactuca sativa HOM05D001090 ORTHO05D002687 3.8e-59 233.4 173 64.7
Psat5g085000 Pisum sativum HOM05D001090 ORTHO05D002687 5.0e-59 233.0 164 69.5
SGA_v2.0_scaffold81G26138 Striga asiatica HOM05D001090 ORTHO05D002687 6.5e-59 232.6 164 70.1
ECA232G2805 Erigeron canadensis HOM05D001090 ORTHO05D002687 8.5e-59 232.3 173 64.7
Oeu051970.1 Olea europaea HOM05D001090 ORTHO05D002687 1.1e-58 231.9 175 66.9
Hma1.2p1_0014F.1_g010140 Hydrangea macrophylla HOM05D001090 ORTHO05D002687 2.5e-58 230.7 175 66.9
Migut.N03263 Erythranthe guttata HOM05D001090 ORTHO05D002687 3.2e-58 230.3 163 68.1
ClCG07G007660 Citrullus lanatus HOM05D001090 ORTHO05D002687 4.2e-58 229.9 165 69.1
MSTRG.24175 Avicennia marina HOM05D001090 ORTHO05D002687 9.3e-58 228.8 163 66.9
Nitab4.5_0001168g0030 Nicotiana tabacum HOM05D001090 ORTHO05D002687 1.2e-57 228.4 173 64.7
PSO764G0256 Papaver somniferum HOM05D001090 ORTHO05D002687 2.1e-57 227.6 179 64.2
SalBow2G0524 Salvia bowleyana HOM05D001090 ORTHO05D002687 2.7e-57 227.3 163 66.9
Aqoxy6G00322 Aquilegia oxysepala HOM05D001090 ORTHO05D002687 3.6e-57 226.9 173 65.3
Sc10g0008070 Simmondsia chinensis HOM05D001090 ORTHO05D002687 7.9e-57 225.7 173 60.1
Solyc11g005020.3 Solanum lycopersicum HOM05D001090 ORTHO05D002687 3.9e-56 223.4 175 64.0
PSO832G0312 Papaver somniferum HOM05D001090 ORTHO05D002687 6.7e-56 222.6 173 65.3
PGSC0003DMG400006051 Solanum tuberosum HOM05D001090 ORTHO05D002687 1.5e-55 221.5 175 63.4
ATR0584G059 Amborella trichopoda HOM05D001090 ORTHO05D002687 2.5e-55 220.7 175 62.3
HanXRQChr09g0260691 Helianthus annuus HOM05D001090 ORTHO05D002687 5.7e-55 219.5 173 62.4
EL10Ac1g01340 Beta vulgaris HOM05D001090 ORTHO05D002687 7.4e-55 219.2 176 61.9
AUR62007722 Chenopodium quinoa HOM05D001090 ORTHO05D002687 1.1e-53 215.3 176 60.2
AUR62013420 Chenopodium quinoa HOM05D001090 ORTHO05D002687 1.4e-53 214.9 176 59.7
Nitab4.5_0002045g0110 Nicotiana tabacum HOM05D001090 ORTHO05D002687 1.5e-52 211.5 208 54.3
Hund17700 Selenicereus undatus HOM05D001090 ORTHO05D002687 2.0e-52 211.1 166 61.4
Hund26778 Selenicereus undatus HOM05D001090 ORTHO05D002687 2.0e-52 211.1 166 61.4
Os11g0195100 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D002687 7.7e-52 209.1 163 60.7
unitig_22.g6741 Utricularia gibba HOM05D001090 ORTHO05D002687 4.2e-50 203.4 163 62.6
Zm00001eb090990 Zea mays HOM05D001090 ORTHO05D002687 1.6e-49 201.4 163 59.5
EL10Ac3g06526 Beta vulgaris HOM05D001090 ORTHO05D002687 1.4e-48 198.4 176 56.8
HPP92_007345 Vanilla planifolia HOM05D001090 ORTHO05D002687 8.8e-48 195.7 163 61.3
Peaxi162Scf01003g00003 Petunia axillaris HOM05D001090 ORTHO05D002687 2.6e-44 184.1 140 64.3
Sopen11g001040 Solanum pennellii HOM05D001090 ORTHO05D002687 1.9e-42 177.9 146 62.3
vmacro05516 Vaccinium macrocarpon HOM05D001090 ORTHO05D002687 1.8e-40 171.4 172 50.6
Glyma.09G123400 Glycine max HOM05D001090 ORTHO05D002687 9.7e-39 165.6 129 61.2
Mapoly0073s0063 Marchantia polymorpha HOM05D001090 ORTHO05D002687 1.8e-32 144.8 182 42.9
AagrBONN_evm.TU.Sc2ySwM_362.1596 Anthoceros agrestis HOM05D001090 ORTHO05D002687 2.0e-31 141.4 167 44.3
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 7.5e-31 139.4 173 45.1
Pp3c27_7170 Physcomitrium patens HOM05D001090 ORTHO05D002687 5.3e-29 133.3 172 43.0
CAN.G342.13 Capsicum annuum HOM05D001090 ORTHO05D002687 2.2e-27 127.9 107 57.9
Hma1.2p1_1075F.1_g254480 Hydrangea macrophylla HOM05D001090 ORTHO05D002687 2.9e-27 127.5 83 77.1
CDE08G0798 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.9e-26 124.8 117 55.6
SEGI_39736 Sequoiadendron giganteum HOM05D001090 ORTHO05D002687 7.5e-23 112.8 87 63.2
CAN.G342.12 Capsicum annuum HOM05D001090 ORTHO05D002687 1.0e-19 102.4 65 76.9
SMO167G0049 Selaginella moellendorffii HOM05D001090 ORTHO05D002687 2.9e-19 100.9 169 34.3
Cpa.g.sc64.147 Carica papaya HOM05D001090 ORTHO05D002687 1.9e-18 98.2 55 85.5
Lj7C347T10 Lonicera japonica HOM05D001090 ORTHO05D002687 2.5e-18 97.8 65 67.7
SMO347G0291 Selaginella moellendorffii HOM05D001090 ORTHO05D002687 5.5e-18 96.7 172 33.1
CBR_g50342 Chara braunii HOM05D001090 ORTHO05D002687 6.1e-17 93.2 116 42.2
SEGI_04791 Sequoiadendron giganteum HOM05D001090 ORTHO05D002687 1.3e-11 75.5 102 38.2
Lj1C8G4 Lonicera japonica HOM05D001090 ORTHO05D002687 4.0e-08 63.9 89 40.4
CARHR249770 Cardamine hirsuta HOM05D001090 ORTHO05D002687 8.9e-08 62.8 79 43.0
BcaB01g02379 Brassica carinata HOM05D001090 ORTHO05D002687 1.2e-07 62.4 79 43.0
A03p31480 Brassica napus HOM05D001090 ORTHO05D002687 1.2e-07 62.4 79 43.0
C03p38470 Brassica napus HOM05D001090 ORTHO05D002687 1.2e-07 62.4 79 43.0
BraA03t12328Z Brassica rapa HOM05D001090 ORTHO05D002687 1.2e-07 62.4 79 43.0
Carub.0006s3542 Capsella rubella HOM05D001090 ORTHO05D002687 1.2e-07 62.4 79 43.0
Thhalv10028392m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 1.2e-07 62.4 79 43.0
BcaC01g06802 Brassica carinata HOM05D001090 ORTHO05D002687 1.5e-07 62.0 79 43.0
BolC3t16120H Brassica oleracea HOM05D001090 ORTHO05D002687 1.5e-07 62.0 79 43.0
RcHm_v2.0_Chr3g0485781 Rosa chinensis HOM05D001090 ORTHO05D002687 1.5e-07 62.0 81 39.5
Mapoly0048s0095 Marchantia polymorpha HOM05D001090 ORTHO05D002687 2.0e-07 61.6 148 29.7
Aqoxy2G02491 Aquilegia oxysepala HOM05D001090 ORTHO05D002687 2.6e-07 61.2 106 34.9
CANSAT25G3239 Cannabis sativa HOM05D001090 ORTHO05D002687 2.6e-07 61.2 79 40.5
Eucgr.A01004 Eucalyptus grandis HOM05D001090 ORTHO05D002687 2.6e-07 61.2 79 43.0
Atru.chr5.862 Acer truncatum HOM05D001090 ORTHO05D002687 3.4e-07 60.8 79 40.5
AT4G01800 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 3.4e-07 60.8 79 41.8
CSS0020175 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 3.4e-07 60.8 79 39.2
COL.COLO4_23129 Corchorus olitorius HOM05D001090 ORTHO05D002687 3.4e-07 60.8 79 41.8
FvH4_1g26240 Fragaria vesca HOM05D001090 ORTHO05D002687 3.4e-07 60.8 81 39.5
FAN19G3148 Fragaria x ananassa HOM05D001090 ORTHO05D002687 3.4e-07 60.8 81 39.5
FAN23G2191 Fragaria x ananassa HOM05D001090 ORTHO05D002687 3.4e-07 60.8 81 39.5
FAN26G0951 Fragaria x ananassa HOM05D001090 ORTHO05D002687 3.4e-07 60.8 81 39.5
MD17G1285000 Malus domestica HOM05D001090 ORTHO05D002687 3.4e-07 60.8 81 39.5
PRCOL_00000237 Prasinoderma coloniale HOM05D001090 ORTHO05D002687 3.4e-07 60.8 124 36.3
Prupe.3G002700 Prunus persica HOM05D001090 ORTHO05D002687 3.4e-07 60.8 81 39.5
Zm00001eb130760 Zea mays HOM05D001090 ORTHO05D002687 3.4e-07 60.8 79 40.5
Cpa.g.sc57.15 Carica papaya HOM05D001090 ORTHO05D002687 4.4e-07 60.5 91 36.3
FAN28G1233 Fragaria x ananassa HOM05D001090 ORTHO05D002687 5.7e-07 60.1 81 39.5
Thecc.01G325300 Theobroma cacao HOM05D001090 ORTHO05D002687 5.7e-07 60.1 79 40.5
Ciclev10018714m.g Citrus clementina HOM05D001090 ORTHO05D002687 7.5e-07 59.7 79 39.2
Nn4g25345 Nelumbo nucifera HOM05D001090 ORTHO05D002687 7.5e-07 59.7 79 39.2
Aa31LG5G1560 Aethionema arabicum HOM05D001090 ORTHO05D002687 9.8e-07 59.3 79 41.8
AL6G51500 Arabidopsis lyrata HOM05D001090 ORTHO05D002687 9.8e-07 59.3 79 40.5
CsaV3_5G029690 Cucumis sativus L. HOM05D001090 ORTHO05D002687 9.8e-07 59.3 90 40.0
THA.LOC104801325 Tarenaya hassleriana HOM05D001090 ORTHO05D002687 9.8e-07 59.3 79 39.2
TWI14G1058 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 1.3e-06 58.9 105 34.3
PGR042G2980 Punica granatum HOM05D001090 ORTHO05D002687 1.7e-06 58.5 79 40.5
Sp6g01650 Schrenkiella parvula HOM05D001090 ORTHO05D002687 1.7e-06 58.5 79 41.8
Sed0004783 Sechium edule HOM05D001090 ORTHO05D002687 1.7e-06 58.5 79 39.2
MCO03G029 Micromonas commoda HOM05D001090 ORTHO05D002687 2.2e-06 58.2 93 33.3
MELO3C011812.2 Cucumis melo HOM05D001090 ORTHO05D002687 2.9e-06 57.8 79 39.2
Dinv33172 Davidia involucrata HOM05D001090 ORTHO05D002687 2.9e-06 57.8 79 38.0
Lj5g0004951 Lotus japonicus HOM05D001090 ORTHO05D002687 2.9e-06 57.8 79 39.2
SEGI_03357 Sequoiadendron giganteum HOM05D001090 ORTHO05D002687 2.9e-06 57.8 79 35.4
SGA_v2.0_scaffold417G51250 Striga asiatica HOM05D001090 ORTHO05D002687 2.9e-06 57.8 79 39.2
AUR62038567 Chenopodium quinoa HOM05D001090 ORTHO05D002687 3.7e-06 57.4 79 38.0
AUR62042009 Chenopodium quinoa HOM05D001090 ORTHO05D002687 3.7e-06 57.4 79 38.0
Ca_10240_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 3.7e-06 57.4 79 39.2
Cc01_g21780 Coffea canephora HOM05D001090 ORTHO05D002687 3.7e-06 57.4 79 39.2
PSO210G4393 Papaver somniferum HOM05D001090 ORTHO05D002687 3.7e-06 57.4 79 39.2
Phvul.007G209266 Phaseolus vulgaris HOM05D001090 ORTHO05D002687 3.7e-06 57.4 96 34.4
Sabra14G0082600 Salix brachista HOM05D001090 ORTHO05D002687 3.7e-06 57.4 79 39.2
TPR.G3065 Trifolium pratense HOM05D001090 ORTHO05D002687 3.7e-06 57.4 79 38.0
HPP92_018286 Vanilla planifolia HOM05D001090 ORTHO05D002687 3.7e-06 57.4 79 39.2
EL10As5g23621 Beta vulgaris HOM05D001090 ORTHO05D002687 4.9e-06 57.0 79 39.2
Gohir.A12G119866 Gossypium hirsutum HOM05D001090 ORTHO05D002687 4.9e-06 57.0 79 39.2
Gohir.D12G123500 Gossypium hirsutum HOM05D001090 ORTHO05D002687 4.9e-06 57.0 79 39.2
Gorai.008G134600 Gossypium raimondii HOM05D001090 ORTHO05D002687 4.9e-06 57.0 79 39.2
Psat6g158920 Pisum sativum HOM05D001090 ORTHO05D002687 4.9e-06 57.0 91 35.2
Sc17g0000040 Simmondsia chinensis HOM05D001090 ORTHO05D002687 4.9e-06 57.0 79 39.2
unitig_90.g27449 Utricularia gibba HOM05D001090 ORTHO05D007803 4.9e-06 57.0 79 36.7
ATR0796G193 Amborella trichopoda HOM05D001090 ORTHO05D002687 6.4e-06 56.6 79 38.0
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 6.4e-06 56.6 79 35.4
DCAR_005716 Daucus carota HOM05D001090 ORTHO05D002687 6.4e-06 56.6 79 38.0
Glyma.02G007700 Glycine max HOM05D001090 ORTHO05D002687 6.4e-06 56.6 92 34.8
Manes.05G009000 Manihot esculenta HOM05D001090 ORTHO05D002687 6.4e-06 56.6 79 39.2
Medtr1g086050 Medicago truncatula HOM05D001090 ORTHO05D002687 6.4e-06 56.6 79 38.0
Hund11623 Selenicereus undatus HOM05D001090 ORTHO05D002687 6.4e-06 56.6 79 38.0
Actinidia21339 Actinidia chinensis HOM05D001090 ORTHO05D002687 8.3e-06 56.2 79 36.7
Cre12.g517900 Chlamydomonas reinhardtii HOM05D001090 ORTHO05D002687 8.3e-06 56.2 108 29.6
DCAR_002937 Daucus carota HOM05D001090 ORTHO05D002687 8.3e-06 56.2 91 34.1
Potri.014G112266 Populus trichocarpa HOM05D001090 ORTHO05D002687 8.3e-06 56.2 79 39.2
QL12p034948 Quercus lobata HOM05D001090 ORTHO05D002687 8.3e-06 56.2 79 38.0


User provided reference genes

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