Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 0.0e+00 1603.6 816 100.0
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 0.0e+00 1336.2 821 83.2
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 0.0e+00 1250.3 825 78.2
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 0.0e+00 1165.6 781 76.4
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 0.0e+00 1165.2 822 74.1
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 0.0e+00 1161.4 825 72.8
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 0.0e+00 1159.4 822 72.7
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 0.0e+00 1158.3 825 73.0
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 0.0e+00 1157.5 822 72.3
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 0.0e+00 1157.5 803 74.2
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 0.0e+00 1152.1 820 73.8
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 0.0e+00 1148.3 820 72.4
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 0.0e+00 1134.8 823 72.3
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 0.0e+00 1133.6 822 72.6
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 0.0e+00 1130.5 822 71.2
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 0.0e+00 1116.7 837 69.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 0.0e+00 1111.3 822 70.0
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 0.0e+00 1109.4 822 69.3
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 0.0e+00 1109.0 795 71.8
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 0.0e+00 1109.0 822 70.4
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 0.0e+00 1108.6 822 70.9
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 0.0e+00 1105.9 808 71.0
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 0.0e+00 1103.2 822 70.9
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 0.0e+00 1101.7 822 71.0
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 0.0e+00 1100.9 822 70.6
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 0.0e+00 1099.3 822 70.3
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 0.0e+00 1094.7 822 70.8
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 0.0e+00 1093.2 822 70.6
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 0.0e+00 1091.6 822 70.1
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 0.0e+00 1088.6 824 69.1
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 0.0e+00 1087.4 871 67.3
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 0.0e+00 1083.2 822 69.8
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 0.0e+00 1080.9 824 68.2
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 0.0e+00 1080.5 815 68.7
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 6.7e-311 1070.5 821 68.7
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 2.0e-307 1058.9 819 66.2
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 5.7e-307 1057.4 815 68.5
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 3.7e-306 1054.7 818 65.6
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 2.0e-304 1048.9 819 67.6
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 1.5e-302 1042.7 820 67.6
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 7.2e-302 1040.4 818 65.0
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 2.1e-301 1038.9 821 65.8
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 6.1e-301 1037.3 801 66.4
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 2.3e-300 1035.4 806 66.9
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 3.0e-300 1035.0 820 64.6
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.2e-298 1028.9 817 66.7
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 5.4e-297 1024.2 822 65.3
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.6e-296 1022.7 789 66.5
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 5.9e-296 1020.8 827 66.6
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 5.0e-295 1017.7 823 66.0
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 8.5e-295 1016.9 828 64.9
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 1.9e-294 1015.8 823 65.6
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 9.4e-294 1013.4 797 65.1
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 3.6e-293 1011.5 823 65.4
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 8.0e-293 1010.4 800 64.8
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 3.0e-292 1008.4 813 64.7
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 5.2e-292 1007.7 827 64.7
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 8.8e-292 1006.9 797 65.4
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.2e-291 1006.5 816 64.3
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 6.3e-290 1000.7 810 64.8
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 8.3e-290 1000.3 816 64.0
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.4e-289 999.6 797 64.7
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 4.1e-289 998.0 802 63.1
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.2e-288 996.5 799 65.2
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 1.6e-288 996.1 820 65.1
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 5.9e-288 994.2 797 64.5
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.5e-286 989.6 797 64.4
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 8.0e-285 983.8 796 64.9
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.5e-283 979.5 733 70.8
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.7e-279 966.1 801 62.7
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 6.6e-279 964.1 810 63.3
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 4.4e-275 951.4 798 61.4
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.2e-274 949.1 790 63.4
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.9e-274 948.0 819 62.0
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 8.3e-274 947.2 824 61.8
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.1e-273 946.8 824 61.7
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.2e-272 943.3 826 61.4
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.7e-272 942.2 820 61.3
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 2.7e-272 942.2 827 61.5
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 1.0e-271 940.3 800 63.1
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.7e-271 939.5 823 61.1
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.7e-271 939.5 825 61.5
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 4.3e-270 934.9 785 63.1
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.1e-268 930.2 821 61.9
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.4e-268 929.9 819 61.2
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 1.5e-267 926.4 824 59.3
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 2.0e-267 926.0 828 61.7
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 2.0e-267 926.0 828 61.7
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 2.0e-267 926.0 828 61.7
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 7.5e-267 924.1 821 61.6
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 1.2e-261 906.7 806 60.3
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 1.7e-258 896.3 810 59.3
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 6.9e-252 874.4 824 58.5
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.4e-249 866.7 812 59.1
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 2.3e-247 859.4 634 72.1
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 2.6e-219 766.1 789 54.0
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.3e-215 753.1 652 60.4
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.0e-215 752.7 487 78.4
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.1e-215 751.9 652 60.4
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.5e-206 723.8 650 60.9
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 6.5e-186 655.2 498 69.1
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.0e-183 647.9 567 58.9
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 2.0e-179 633.6 493 67.3
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 2.7e-179 633.3 843 45.0
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.2e-176 624.4 499 65.5
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 5.7e-174 615.5 499 64.7
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.8e-173 613.2 500 65.0
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 8.0e-168 595.1 525 61.3
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.0e-166 590.5 491 64.2
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 4.9e-165 585.9 490 63.7
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 4.9e-165 585.9 490 63.7
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 5.4e-164 582.4 479 63.5
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 5.6e-161 572.4 740 46.2
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 1.2e-160 571.2 460 64.8
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.8e-159 567.4 462 64.3
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.3e-159 567.0 520 57.3
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 4.0e-159 566.2 460 65.4
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 5.4e-156 555.8 460 64.1
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.2e-155 554.7 460 63.3
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 2.3e-154 550.4 477 62.7
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 5.0e-154 549.3 454 63.7
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 6.6e-154 548.9 458 62.7
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 3.0e-146 523.5 412 64.8
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 6.6e-146 522.3 457 61.3
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 9.5e-145 518.5 691 44.1
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.1e-144 517.3 464 60.6
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.2e-139 501.5 455 59.1
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 4.6e-139 499.6 450 58.7
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 2.5e-137 493.8 714 42.9
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 3.1e-135 486.9 454 57.3
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 3.4e-134 483.4 456 57.2
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 7.6e-134 482.3 456 57.0
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.7e-133 481.1 758 40.8
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 3.8e-133 479.9 756 40.5
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 4.8e-128 463.0 465 54.2
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.2e-124 450.3 463 54.9
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 9.0e-119 432.2 299 72.2
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 9.0e-111 405.6 653 43.0
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 6.3e-104 382.9 312 62.5
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 9.7e-97 359.0 278 69.4
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.7e-93 348.2 457 44.4
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.8e-88 330.1 231 74.9
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.1e-79 302.4 197 80.7
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.7e-64 251.9 358 39.7
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 6.3e-64 250.0 147 82.3
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 8.0e-59 233.0 790 28.2
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 9.2e-55 219.5 154 72.1
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 9.2e-55 219.5 154 72.1
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.6e-51 208.8 362 40.3
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 2.8e-51 208.0 147 67.3
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 2.8e-51 208.0 139 74.8
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 1.6e-46 192.2 436 32.3
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.5e-28 132.5 90 66.7
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.7e-27 127.5 155 48.4
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.4e-26 125.9 155 47.7
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.1e-20 106.3 98 62.2
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.8e-19 101.7 96 55.2
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.4e-18 98.6 70 64.3
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.7e-13 82.4 54 72.2
MD08G1099400 Malus domestica HOM05D031194 ORTHO05D029699 6.9e-10 70.5 63 57.1


User provided reference genes

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