Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 4.8e-61 237.7 120 100.0
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 4.1e-52 208.0 137 79.6
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.4e-51 204.9 137 77.4
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 4.5e-51 204.5 137 77.4
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 7.7e-51 203.8 137 78.1
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 7.7e-51 203.8 137 78.1
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 1.3e-50 203.0 137 77.4
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 1.3e-50 203.0 137 77.4
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-50 203.0 137 77.4
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.3e-50 203.0 137 77.4
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.3e-50 203.0 137 77.4
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 1.3e-50 203.0 142 78.9
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 1.3e-50 203.0 138 75.4
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.2e-50 202.2 137 77.4
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 2.2e-50 202.2 137 77.4
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 2.2e-50 202.2 135 77.8
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 2.2e-50 202.2 137 77.4
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 2.2e-50 202.2 137 75.9
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 5.0e-50 201.1 137 74.5
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 6.5e-50 200.7 136 77.2
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 6.5e-50 200.7 144 76.4
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 6.5e-50 200.7 137 78.1
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 1.1e-49 199.9 137 75.2
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.4e-49 199.5 137 76.6
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.9e-49 199.1 139 77.7
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 2.5e-49 198.7 145 75.2
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 3.2e-49 198.4 135 74.8
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 5.5e-49 197.6 134 76.9
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 5.5e-49 197.6 137 75.9
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 7.2e-49 197.2 136 75.0
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 7.2e-49 197.2 132 76.5
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 1.2e-48 196.4 137 76.6
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 1.6e-48 196.1 148 73.6
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 1.6e-48 196.1 137 75.9
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.6e-48 196.1 164 67.1
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 2.1e-48 195.7 137 75.2
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 3.6e-48 194.9 137 74.5
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 4.6e-48 194.5 137 74.5
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 4.6e-48 194.5 137 74.5
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 4.6e-48 194.5 138 73.2
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 6.1e-48 194.1 136 72.8
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 6.1e-48 194.1 136 72.8
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 6.1e-48 194.1 136 72.8
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 7.9e-48 193.7 133 75.2
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.0e-47 193.4 137 74.5
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 1.0e-47 193.4 137 74.5
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.4e-47 193.0 136 74.3
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 2.3e-47 192.2 133 74.4
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 3.0e-47 191.8 129 76.7
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 6.7e-47 190.7 135 74.1
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 6.7e-47 190.7 135 74.1
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 6.7e-47 190.7 135 74.1
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 8.8e-47 190.3 137 74.5
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 8.8e-47 190.3 137 73.0
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 1.1e-46 189.9 137 72.3
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 1.5e-46 189.5 135 73.3
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 1.5e-46 189.5 135 73.3
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 1.5e-46 189.5 135 73.3
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 1.5e-46 189.5 132 73.5
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 1.5e-46 189.5 135 74.1
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 1.5e-46 189.5 129 76.0
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 2.0e-46 189.1 144 71.5
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 2.0e-46 189.1 135 73.3
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 2.0e-46 189.1 135 73.3
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 2.0e-46 189.1 135 73.3
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 5.7e-46 187.6 135 72.6
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 5.7e-46 187.6 135 71.9
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 9.7e-46 186.8 132 72.7
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 9.7e-46 186.8 140 71.4
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 1.3e-45 186.4 137 70.8
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.3e-45 186.4 135 73.3
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 2.2e-45 185.7 135 71.9
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.8e-45 185.3 169 65.1
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 2.8e-45 185.3 123 79.7
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 4.8e-45 184.5 137 69.3
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 4.8e-45 184.5 138 71.7
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 6.3e-45 184.1 123 78.9
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 8.2e-45 183.7 137 69.3
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 1.1e-44 183.3 135 71.1
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 3.1e-44 181.8 127 75.6
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 4.1e-44 181.4 135 69.6
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 5.3e-44 181.0 140 68.6
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 9.1e-44 180.3 93 97.8
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 1.2e-43 179.9 129 72.1
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 1.2e-43 179.9 135 70.4
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 2.0e-43 179.1 140 67.1
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 2.0e-43 179.1 137 67.2
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 7.7e-43 177.2 134 70.9
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 1.0e-42 176.8 142 68.3
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 1.7e-42 176.0 123 74.8
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 1.7e-42 176.0 126 75.4
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.7e-42 176.0 137 69.3
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 2.9e-42 175.3 144 66.7
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 3.8e-42 174.9 138 68.8
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 8.5e-42 173.7 129 70.5
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 1.4e-41 172.9 128 71.1
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 7.2e-41 170.6 133 66.2
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 3.6e-40 168.3 131 66.4
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 4.7e-40 167.9 93 89.2
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 7.9e-40 167.2 93 87.1
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 1.4e-39 166.4 123 70.7
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 1.4e-39 166.4 123 70.7
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 6.7e-39 164.1 130 65.4
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 2.0e-38 162.5 93 88.2
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 1.7e-37 159.5 93 86.0
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 2.2e-37 159.1 131 61.1
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 2.8e-37 158.7 95 85.3
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.8e-37 157.9 97 83.5
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 4.8e-37 157.9 106 80.2
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 7.0e-36 154.1 128 60.2
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 3.8e-34 148.3 124 60.5
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 1.4e-33 146.4 90 83.3
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 7.2e-33 144.1 93 77.4
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 9.4e-33 143.7 125 62.4
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 2.7e-32 142.1 145 58.6
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 6.1e-32 141.0 126 63.5
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 1.4e-31 139.8 96 76.0
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 1.8e-28 129.4 84 79.8
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 7.0e-28 127.5 87 69.0
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 1.6e-27 126.3 118 56.8
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 1.6e-27 126.3 115 55.7
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.6e-27 125.6 79 79.7
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 5.9e-27 124.4 74 83.8
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 1.4e-23 113.2 133 49.6
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 2.3e-23 112.5 94 63.8
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 6.7e-23 110.9 84 75.0
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.5e-22 109.8 85 72.9
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 2.6e-22 109.0 84 73.8
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 2.8e-21 105.5 53 92.5
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 3.1e-20 102.1 84 67.9
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 5.3e-20 101.3 53 86.8
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 5.9e-19 97.8 120 49.2
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 7.7e-19 97.4 86 66.3
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.7e-18 96.3 112 47.3
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 2.9e-18 95.5 82 64.6
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.8e-18 95.1 52 82.7
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 6.5e-18 94.4 50 86.0
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 1.9e-17 92.8 104 44.2
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 1.9e-17 92.8 127 47.2
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 3.2e-17 92.0 61 75.4
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 4.2e-17 91.7 61 77.0
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.2e-14 83.6 77 57.1
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 4.4e-14 81.6 45 84.4
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.7e-13 79.7 140 40.7
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 7.0e-12 74.3 128 32.8
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.6e-11 73.2 64 60.9
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 1.0e-10 70.5 65 58.5
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 5.0e-10 68.2 43 83.7
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 1.6e-08 63.2 92 41.3
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 1.4e-07 60.1 53 62.3
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 8.9e-07 57.4 55 58.2
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 7.5e-06 54.3 62 51.6


User provided reference genes

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