Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.6e-201 706.1 402 100.0
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.6e-190 669.5 407 94.6
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 1.0e-155 553.9 410 80.7
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.5e-146 523.5 418 77.0
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 2.0e-143 513.1 408 74.5
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.8e-137 492.7 415 71.8
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 2.3e-136 489.6 408 72.8
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 1.2e-135 487.3 408 72.1
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.7e-134 483.4 411 73.2
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 3.7e-134 482.3 409 72.6
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.1e-133 480.7 419 71.6
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.1e-133 480.7 408 72.1
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 7.0e-133 478.0 418 69.4
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.6e-132 476.9 411 71.0
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.5e-132 475.7 402 71.4
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.9e-130 469.9 411 68.9
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 7.3e-130 468.0 409 70.4
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.1e-128 464.2 408 69.6
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 5.2e-128 461.8 409 69.2
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 6.8e-128 461.5 410 70.7
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-127 460.3 409 68.9
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.6e-127 459.5 354 75.1
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 2.6e-127 459.5 427 68.1
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 3.4e-127 459.1 418 68.4
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.7e-126 456.8 409 68.9
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.2e-126 456.4 409 68.0
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 3.7e-126 455.7 410 70.0
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.1e-125 454.1 410 69.0
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 3.2e-125 452.6 408 70.6
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 3.2e-125 452.6 408 69.1
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.1e-125 452.2 410 69.8
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 7.1e-125 451.4 354 74.6
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.2e-124 450.7 411 68.4
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 1.6e-124 450.3 408 70.3
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.1e-124 449.9 408 70.3
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.5e-124 449.1 354 74.3
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 4.6e-124 448.7 414 65.9
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 6.0e-124 448.4 410 69.5
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 1.3e-123 447.2 408 69.6
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.3e-123 447.2 410 68.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 6.6e-123 444.9 407 65.8
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 8.6e-123 444.5 410 68.5
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 8.6e-123 444.5 410 70.0
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.1e-122 444.1 411 68.4
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 9.5e-122 441.0 410 68.8
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.2e-121 440.7 410 68.5
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.6e-121 440.3 410 69.0
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 2.1e-121 439.9 409 67.2
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 2.8e-121 439.5 408 67.6
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 4.7e-121 438.7 408 65.7
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 1.1e-120 437.6 403 69.0
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 8.9e-120 434.5 409 67.2
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 1.2e-119 434.1 404 66.8
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 2.0e-119 433.3 408 67.9
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.4e-119 432.6 431 65.7
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 4.4e-119 432.2 407 68.3
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.8e-119 431.8 407 65.8
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.3e-118 430.6 409 66.7
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.7e-118 430.3 408 65.2
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-118 429.9 404 66.3
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.9e-118 429.5 405 65.9
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 2.9e-118 429.5 412 67.0
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 4.9e-118 428.7 405 67.7
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.4e-118 428.3 404 66.3
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 8.4e-118 427.9 409 66.3
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.4e-117 427.2 412 68.7
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.9e-117 426.8 408 64.2
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.4e-117 426.4 341 74.2
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.4e-117 426.4 408 67.4
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 7.1e-117 424.9 404 68.3
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.6e-116 423.7 408 66.2
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.5e-116 422.5 409 65.8
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 7.8e-116 421.4 411 64.2
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.3e-115 420.6 404 67.8
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.3e-115 419.9 408 64.7
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 5.1e-115 418.7 413 64.6
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.6e-115 417.9 390 66.4
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.5e-114 417.2 408 66.2
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 1.9e-114 416.8 424 64.6
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 5.6e-114 415.2 431 63.1
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.3e-114 414.8 408 65.2
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 6.2e-113 411.8 407 64.1
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.1e-112 411.0 438 61.2
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.4e-112 410.6 408 64.5
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 2.4e-112 409.8 338 69.8
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 2.4e-112 409.8 408 64.2
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 5.2e-112 408.7 432 62.0
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 5.2e-112 408.7 412 64.1
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 6.9e-112 408.3 406 63.3
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.2e-111 407.5 408 64.7
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 4.4e-111 405.6 332 69.9
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 7.6e-111 404.8 407 65.4
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.9e-110 402.9 431 61.9
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 2.9e-110 402.9 405 63.7
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 3.2e-109 399.4 411 65.2
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 7.1e-109 398.3 437 60.4
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 7.1e-109 398.3 425 61.2
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 7.1e-109 398.3 425 61.2
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.6e-108 397.1 406 63.5
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 4.6e-108 395.6 425 60.9
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.0e-108 395.2 405 63.5
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.0e-107 394.4 407 60.4
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.3e-107 394.0 431 60.3
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-107 394.0 411 63.3
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 3.0e-107 392.9 410 62.0
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 3.9e-107 392.5 317 75.7
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.3e-105 387.5 349 70.2
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.6e-105 386.0 340 70.3
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.1e-104 384.4 425 60.9
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 2.0e-103 380.2 336 71.4
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.2e-102 376.7 435 58.6
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 2.9e-102 376.3 428 60.3
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 8.4e-102 374.8 410 61.5
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 5.4e-101 372.1 333 64.6
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 5.6e-98 362.1 405 57.3
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 3.1e-96 356.3 330 67.0
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 9.0e-96 354.8 410 58.5
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.3e-94 350.9 368 61.1
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 4.9e-94 349.0 349 64.8
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 3.2e-93 346.3 406 58.1
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.5e-90 337.4 420 56.2
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 9.0e-88 328.2 379 54.9
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 4.3e-82 309.3 422 51.2
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 3.2e-77 293.1 342 55.8
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 9.3e-77 291.6 372 55.6
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 6.1e-76 288.9 349 56.7
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-75 287.7 402 54.2
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 8.7e-75 285.0 370 55.1
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 1.1e-69 268.1 412 46.8
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.1e-64 249.6 247 66.8
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 4.5e-63 246.1 359 48.7
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.8e-62 243.0 321 55.1
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.0e-54 218.4 228 62.3
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.9e-53 214.2 264 57.6
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.9e-53 214.2 264 57.6
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 4.2e-53 213.0 212 62.3
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.8e-48 197.6 247 53.0
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.2e-47 194.9 214 57.0
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.7e-46 191.0 177 59.9
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 3.2e-45 186.8 420 39.3
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.8e-41 173.7 323 44.3
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 5.0e-38 162.9 383 37.3
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 3.2e-37 160.2 378 38.6
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.0e-35 155.2 200 52.5
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 6.8e-35 152.5 340 41.2
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.7e-33 147.9 195 51.3
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.2e-33 147.5 393 36.9
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 9.2e-32 142.1 104 75.0
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.7e-30 137.9 110 70.0
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 1.8e-27 127.9 152 61.8
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 3.0e-22 110.5 246 32.9
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 8.3e-17 92.4 125 55.2
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.8e-12 77.4 236 28.0


User provided reference genes

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