Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017112 Carpinus fangiana HOM05D006201 ORTHO05D007178 0.0e+00 1842.4 950 100.0
Haze_21088 Corylus avellana HOM05D006201 ORTHO05D007178 0.0e+00 1694.5 969 91.0
QL07p033902 Quercus lobata HOM05D006201 ORTHO05D007178 0.0e+00 1351.3 945 75.2
CiPaw.09G215500 Carya illinoinensis HOM05D006201 ORTHO05D007178 0.0e+00 1321.6 945 73.5
Prupe.6G285000 Prunus persica HOM05D006201 ORTHO05D007178 0.0e+00 1106.3 961 61.9
MD04G1166800 Malus domestica HOM05D006201 ORTHO05D007178 9.0e-304 1047.0 965 59.4
FAN05G0393 Fragaria x ananassa HOM05D006201 ORTHO05D007178 1.7e-294 1016.1 957 57.3
FAN05G0066 Fragaria x ananassa HOM05D006201 ORTHO05D007178 1.9e-293 1012.7 957 57.1
CANSAT35G1627 Cannabis sativa HOM05D006201 ORTHO05D007178 1.2e-284 983.4 936 57.6
TWI77G1003 Tripterygium wilfordii HOM05D006201 ORTHO05D007178 2.5e-282 975.7 939 58.0
FAN14G5119 Fragaria x ananassa HOM05D006201 ORTHO05D007178 2.2e-278 962.6 1000 53.6
Thecc.05G006600 Theobroma cacao HOM05D006201 ORTHO05D007178 2.3e-275 952.6 941 55.4
Manes.09G111900 Manihot esculenta HOM05D006201 ORTHO05D007178 3.0e-275 952.2 953 55.2
Actinidia11549 Actinidia chinensis HOM05D006201 ORTHO05D007178 3.4e-271 938.7 953 55.9
Ciclev10024812m.g Citrus clementina HOM05D006201 ORTHO05D007178 1.3e-270 936.8 957 55.4
FAN02G1356 Fragaria x ananassa HOM05D006201 ORTHO05D007178 6.7e-267 924.5 957 53.3
Gorai.012G119200 Gossypium raimondii HOM05D006201 ORTHO05D007178 4.4e-266 921.8 949 54.7
Gohir.A04G095500 Gossypium hirsutum HOM05D006201 ORTHO05D007178 7.4e-266 921.0 952 54.5
Sabra16G0130900 Salix brachista HOM05D006201 ORTHO05D007178 3.5e-263 912.1 960 54.3
vmacro20327 Vaccinium macrocarpon HOM05D006201 ORTHO05D007178 9.4e-261 904.0 968 53.6
Duzib093G1324 Durio zibethinus HOM05D006201 ORTHO05D007178 2.1e-260 902.9 956 53.5
Cpa.g.sc861.1 Carica papaya HOM05D006201 ORTHO05D007178 2.6e-250 869.4 944 52.0
PGR004G1794 Punica granatum HOM05D006201 ORTHO05D007178 3.7e-249 865.5 934 52.2
Rhsim05G0225800 Rhododendron simsii HOM05D006201 ORTHO05D007178 4.8e-249 865.1 959 51.8
Lj2C67G1 Lonicera japonica HOM05D006201 ORTHO05D007178 5.5e-245 851.7 921 52.2
Psat3g124360 Pisum sativum HOM05D006201 ORTHO05D007178 3.6e-244 849.0 935 50.8
VMungo1383G1579 Vigna mungo HOM05D006201 ORTHO05D007178 1.2e-242 844.0 936 51.9
TPR.G6637 Trifolium pratense HOM05D006201 ORTHO05D007178 4.4e-242 842.0 929 51.3
Glyma.07G156700 Glycine max HOM05D006201 ORTHO05D007178 3.1e-240 835.9 937 51.9
ClCG03G002510 Citrullus lanatus HOM05D006201 ORTHO05D007178 4.7e-236 822.0 824 53.2
Medtr7g070280 Medicago truncatula HOM05D006201 ORTHO05D007178 6.1e-236 821.6 935 50.7
Lalb_Chr01g0023361 Lupinus albus HOM05D006201 ORTHO05D007178 1.4e-235 820.5 940 50.2
Lj1g0025030 Lotus japonicus HOM05D006201 ORTHO05D007178 6.8e-235 818.1 950 50.3
Sed0013207 Sechium edule HOM05D006201 ORTHO05D007178 7.3e-229 798.1 822 52.1
CsaV3_1G013180 Cucumis sativus L. HOM05D006201 ORTHO05D007178 1.5e-226 790.4 831 51.1
Nitab4.5_0006173g0010 Nicotiana tabacum HOM05D006201 ORTHO05D007178 1.9e-221 773.5 932 48.4
COL.COLO4_14449 Corchorus olitorius HOM05D006201 ORTHO05D007178 4.1e-216 755.7 833 51.0
Oeu020418.1 Olea europaea HOM05D006201 ORTHO05D007178 1.7e-214 750.4 937 47.2
Nitab4.5_0003493g0040 Nicotiana tabacum HOM05D006201 ORTHO05D007178 3.9e-214 749.2 936 47.1
FvH4_6g10600 Fragaria vesca HOM05D006201 ORTHO05D007178 4.0e-211 739.2 703 55.9
Aqoxy1G01280 Aquilegia oxysepala HOM05D006201 ORTHO05D007178 3.4e-210 736.1 953 44.8
MELO3C004988.2 Cucumis melo HOM05D006201 ORTHO05D007178 4.4e-210 735.7 832 48.8
GSVIVG01030267001 Vitis vinifera HOM05D006201 ORTHO05D007178 4.9e-209 732.3 697 61.0
DCAR_023994 Daucus carota HOM05D006201 ORTHO05D007178 6.6e-206 721.8 941 45.1
PGSC0003DMG400026051 Solanum tuberosum HOM05D006201 ORTHO05D007178 6.6e-206 721.8 938 45.5
PSO349G0155 Papaver somniferum HOM05D006201 ORTHO05D007178 1.9e-205 720.3 932 45.4
MSTRG.5539 Avicennia marina HOM05D006201 ORTHO05D007178 2.5e-205 719.9 931 45.2
Sopen01g036050 Solanum pennellii HOM05D006201 ORTHO05D007178 1.4e-203 714.1 938 45.1
PSO017G2042 Papaver somniferum HOM05D006201 ORTHO05D007178 2.4e-203 713.4 926 45.2
Cc06_g00730 Coffea canephora HOM05D006201 ORTHO05D007178 2.0e-202 710.3 921 44.8
RcHm_v2.0_Chr3g0461591 Rosa chinensis HOM05D006201 ORTHO05D007178 2.0e-202 710.3 677 56.0
Gohir.D04G135400 Gossypium hirsutum HOM05D006201 ORTHO05D007178 2.2e-201 706.8 714 54.1
arahy.Tifrunner.gnm1.ann1.WUZ318 Arachis hypogaea HOM05D006201 ORTHO05D007178 3.2e-200 703.0 954 44.2
arahy.Tifrunner.gnm1.ann1.0N3F9M Arachis hypogaea HOM05D006201 ORTHO05D007178 8.7e-198 694.9 954 43.9
AL3G19800 Arabidopsis lyrata HOM05D006201 ORTHO05D007178 2.8e-196 689.9 942 43.0
BraA05t22910Z Brassica rapa HOM05D006201 ORTHO05D007178 8.1e-196 688.3 929 44.0
Sc22g0002850 Simmondsia chinensis HOM05D006201 ORTHO05D007178 5.3e-195 685.6 916 44.8
THA.LOC104823304 Tarenaya hassleriana HOM05D006201 ORTHO05D007178 9.0e-195 684.9 935 44.1
A05p40010 Brassica napus HOM05D006201 ORTHO05D007178 2.6e-194 683.3 926 44.1
C05p59050 Brassica napus HOM05D006201 ORTHO05D007178 3.4e-194 682.9 931 44.1
BolC5t34557H Brassica oleracea HOM05D006201 ORTHO05D007178 5.8e-194 682.2 931 44.0
Aa31LG5G18800 Aethionema arabicum HOM05D006201 ORTHO05D007178 1.3e-193 681.0 947 42.2
CSS0012693 Camellia sinensis var. sinensis HOM05D006201 ORTHO05D007178 1.6e-191 674.1 702 55.0
CARHR083120 Cardamine hirsuta HOM05D006201 ORTHO05D007178 2.7e-191 673.3 942 42.7
MBI09_g02137_MAGBIO Magnolia biondii HOM05D006201 ORTHO05D007178 6.0e-191 672.2 960 44.6
Carub.0003s0793 Capsella rubella HOM05D006201 ORTHO05D007178 1.3e-190 671.0 943 42.1
Sp3g07220 Schrenkiella parvula HOM05D006201 ORTHO05D007178 3.9e-190 669.5 942 42.8
HanXRQChr12g0375461 Helianthus annuus HOM05D006201 ORTHO05D007178 9.6e-189 664.8 946 44.5
Migut.J00094 Erythranthe guttata HOM05D006201 ORTHO05D007178 2.8e-188 663.3 929 43.4
EL10Ac5g12480 Beta vulgaris HOM05D006201 ORTHO05D007178 9.0e-187 658.3 929 42.3
Thhalv10022535m.g Eutrema salsugineum HOM05D006201 ORTHO05D007178 3.4e-186 656.4 944 42.2
Lsat_1_v5_gn_5_149661 Lactuca sativa HOM05D006201 ORTHO05D007178 9.9e-186 654.8 946 43.4
BcaC05g29618 Brassica carinata HOM05D006201 ORTHO05D007178 2.5e-181 640.2 931 42.0
SGA_v2.0_scaffold85G26680 Striga asiatica HOM05D006201 ORTHO05D007178 2.5e-176 623.6 955 42.8
Ah.12g059100 Amaranthus hybridus HOM05D006201 ORTHO05D007178 3.2e-176 623.2 931 40.9
AUR62036404 Chenopodium quinoa HOM05D006201 ORTHO05D007178 1.0e-174 618.2 922 40.2
Ca_07697_v3 Cicer arietinum L. HOM05D006201 ORTHO05D007178 2.5e-173 613.6 726 49.4
TAR623G1020 Trochodendron aralioides HOM05D006201 ORTHO05D007178 3.3e-173 613.2 610 55.9
Dinv12171 Davidia involucrata HOM05D006201 ORTHO05D007178 7.6e-170 602.1 562 55.7
Eucgr.K02944 Eucalyptus grandis HOM05D006201 ORTHO05D007178 1.9e-168 597.4 673 49.9
AUR62030757 Chenopodium quinoa HOM05D006201 ORTHO05D007178 6.9e-155 552.4 799 40.6
Solyc01g090260.5.1 Solanum lycopersicum HOM05D006201 ORTHO05D007178 7.7e-154 548.9 699 45.1
Nn4g22431 Nelumbo nucifera HOM05D006201 ORTHO05D007178 3.3e-149 533.5 625 49.8
CAN.G1473.10 Capsicum annuum HOM05D006201 ORTHO05D007178 1.2e-146 525.0 651 45.9
Atru.chr8.2337 Acer truncatum HOM05D006201 ORTHO05D007178 2.5e-144 517.3 497 58.8
ECA248G2923 Erigeron canadensis HOM05D006201 ORTHO05D007178 4.4e-141 506.5 1161 32.3
AUR62044474 Chenopodium quinoa HOM05D006201 ORTHO05D007178 2.0e-138 497.7 819 38.7
AT3G08800 Arabidopsis thaliana HOM05D006201 ORTHO05D007178 2.0e-130 471.1 652 43.6
Potri.016G127500 Populus trichocarpa HOM05D006201 ORTHO05D007178 3.0e-126 457.2 503 50.5
Phvul.008G092200 Phaseolus vulgaris HOM05D006201 ORTHO05D007178 8.8e-126 455.7 478 53.3
unitig_578.g15909 Utricularia gibba HOM05D006201 ORTHO05D007178 3.4e-125 453.8 968 36.1
Rhsim05G0226000 Rhododendron simsii HOM05D006201 ORTHO05D007178 3.2e-107 394.0 497 47.7
Zm00001eb012870 Zea mays HOM05D006201 ORTHO05D007178 2.7e-106 391.0 788 35.9
Dinv12170 Davidia involucrata HOM05D006201 ORTHO05D007178 9.5e-104 382.5 386 58.5
HPP92_025099 Vanilla planifolia HOM05D006201 ORTHO05D007178 2.8e-95 354.4 707 33.4
ClCG10G022450 Citrullus lanatus HOM05D006201 ORTHO05D007178 1.9e-91 341.7 782 32.7
Hma1.2p1_0479F.1_g161690 Hydrangea macrophylla HOM05D006201 ORTHO05D007178 2.4e-91 341.3 344 52.3
CDE04G1687 Ceratophyllum demersum HOM05D006201 ORTHO05D007178 1.7e-89 335.1 939 29.3
Hund14937 Selenicereus undatus HOM05D006201 ORTHO05D007178 8.4e-84 316.2 389 48.1
Hund14942 Selenicereus undatus HOM05D006201 ORTHO05D007178 2.0e-77 295.0 476 37.2
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 1.1e-75 289.3 283 55.8
RcHm_v2.0_Chr3g0461601 Rosa chinensis HOM05D006201 ORTHO05D007178 2.7e-74 284.6 250 64.0
Peaxi162Scf00028g00419 Petunia axillaris HOM05D006201 ORTHO05D007178 1.1e-70 272.7 421 42.0
Mapoly0011s0138 Marchantia polymorpha HOM05D006201 ORTHO05D007178 3.8e-68 264.2 839 28.4
ATR0605G352 Amborella trichopoda HOM05D006201 ORTHO05D007178 3.5e-58 231.1 439 35.5
AagrBONN_evm.TU.Sc2ySwM_344.1123 Anthoceros agrestis HOM05D006201 ORTHO05D007178 5.3e-54 217.2 520 31.0
Peaxi162Scf00028g00413 Petunia axillaris HOM05D006201 ORTHO05D007178 3.9e-49 201.1 379 36.7
Pp3c1_35690 Physcomitrium patens HOM05D006201 ORTHO05D007178 4.3e-48 197.6 369 33.1
SEGI_17367 Sequoiadendron giganteum HOM05D006201 ORTHO05D007178 9.1e-46 189.9 213 46.9
ATR0605G310 Amborella trichopoda HOM05D006201 ORTHO05D007178 5.0e-44 184.1 344 38.4
SEGI_30477 Sequoiadendron giganteum HOM05D006201 ORTHO05D007178 2.0e-32 145.6 352 29.0
Nn2g13629 Nelumbo nucifera HOM05D001630 ORTHO05D007178 5.7e-32 144.1 485 27.6
CAN.G1473.9 Capsicum annuum HOM05D006201 ORTHO05D007178 1.7e-31 142.5 205 45.4
CANSAT64G1736 Cannabis sativa HOM05D006201 ORTHO05D007178 1.7e-28 132.5 121 56.2
SMO351G0194 Selaginella moellendorffii HOM05D006201 ORTHO05D007178 2.5e-19 102.1 446 23.3
Rhsim05G0225900 Rhododendron simsii HOM05D006201 ORTHO05D007178 3.2e-19 101.7 106 54.7
CBR_g8780 Chara braunii HOM05D006201 ORTHO05D007178 1.6e-18 99.4 310 26.5
CARHR220410 Cardamine hirsuta HOM05D006201 ORTHO05D007178 6.3e-15 87.4 131 35.1
SEGI_33665 Sequoiadendron giganteum HOM05D006201 ORTHO05D007178 8.0e-10 70.5 216 30.6
Rhsim05G0204900 Rhododendron simsii HOM05D006201 ORTHO05D007178 1.4e-09 69.7 51 68.6


User provided reference genes

Program Settings