Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 0.0e+00 1936.8 974 100.0
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 0.0e+00 1609.3 1006 83.0
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 0.0e+00 1433.7 975 74.9
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 0.0e+00 1409.4 973 74.4
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 0.0e+00 1173.7 977 63.4
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 0.0e+00 1162.9 980 62.4
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 0.0e+00 1139.0 982 61.7
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 0.0e+00 1118.2 1004 58.9
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 0.0e+00 1115.5 973 59.1
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 0.0e+00 1113.2 970 59.0
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 0.0e+00 1110.1 976 58.9
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 0.0e+00 1107.8 977 58.9
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 0.0e+00 1107.0 981 60.0
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 0.0e+00 1105.9 1051 57.3
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 0.0e+00 1102.0 923 62.4
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 0.0e+00 1100.9 986 58.5
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 0.0e+00 1099.3 979 59.6
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 0.0e+00 1097.8 1000 57.8
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 0.0e+00 1095.1 1006 57.3
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 0.0e+00 1090.9 969 57.7
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 0.0e+00 1081.6 973 58.0
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 0.0e+00 1080.5 972 59.3
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 6.2e-308 1060.8 990 58.4
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.8e-299 1032.7 1003 57.1
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 2.5e-293 1012.3 853 62.7
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 6.0e-287 991.1 968 53.9
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 2.4e-272 942.6 966 52.4
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 8.7e-270 934.1 966 52.4
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 2.5e-269 932.6 949 53.3
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 5.6e-269 931.4 980 52.4
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 4.0e-267 925.2 969 52.4
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 7.6e-266 921.0 914 53.7
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 2.2e-265 919.5 766 63.7
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 8.7e-262 907.5 969 49.2
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 1.5e-261 906.7 969 49.6
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 9.6e-261 904.0 970 49.9
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 1.3e-257 893.6 976 49.6
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 2.9e-257 892.5 847 56.3
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 9.3e-256 887.5 915 50.6
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 1.6e-255 886.7 1000 48.1
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 1.8e-254 883.2 968 50.1
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 1.9e-253 879.8 966 49.6
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 1.1e-251 874.0 924 50.0
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 1.8e-251 873.2 917 50.1
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 3.2e-248 862.4 947 50.1
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 2.3e-246 856.3 918 50.9
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 3.4e-242 842.4 1052 46.0
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 4.5e-242 842.0 865 52.8
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 7.7e-242 841.3 979 48.9
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 2.9e-241 839.3 804 56.7
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 3.8e-241 839.0 761 59.5
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 2.7e-239 832.8 902 50.8
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 9.7e-237 824.3 968 48.1
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 1.2e-234 817.4 1012 47.3
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 3.1e-227 792.7 656 65.2
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 1.0e-225 787.7 961 48.8
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 2.2e-225 786.6 899 49.1
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 3.7e-212 742.7 671 58.7
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 1.2e-210 737.6 806 51.2
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 1.0e-209 734.6 762 52.2
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 2.9e-209 733.0 803 49.2
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 9.2e-203 711.4 907 45.0
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 1.5e-200 704.1 816 49.6
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 2.8e-191 673.3 656 54.7
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 4.0e-190 669.5 848 46.1
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 3.7e-188 662.9 826 46.2
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 1.1e-182 644.8 482 68.5
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 1.3e-180 637.9 943 40.3
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 3.0e-177 626.7 667 51.3
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 3.0e-169 600.1 862 42.6
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 3.9e-169 599.7 496 63.3
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 1.5e-168 597.8 991 39.8
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 6.2e-159 565.8 544 58.8
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 4.8e-143 513.1 524 55.7
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 6.9e-142 509.2 424 63.7
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 1.5e-136 491.5 795 39.6
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 7.7e-133 479.2 478 53.1
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 4.3e-128 463.4 414 57.2
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 8.5e-116 422.5 338 63.6
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 4.8e-111 406.8 291 68.7
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 3.5e-109 400.6 619 40.2
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 2.4e-102 377.9 410 48.3
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 4.7e-98 363.6 858 33.4
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 4.7e-90 337.0 948 28.9
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.4e-86 325.5 497 40.6
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 1.4e-81 308.9 248 65.3
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 8.6e-76 289.7 239 57.3
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 2.3e-73 281.6 919 27.1
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 8.6e-68 263.1 198 69.7
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 1.6e-66 258.8 183 67.8
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 2.8e-66 258.1 928 26.2
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 4.0e-65 254.2 886 26.4
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 4.4e-64 250.8 318 50.0
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.8e-57 228.8 172 69.8
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 2.2e-55 221.9 201 54.2
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 1.8e-49 202.2 171 59.6
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 3.5e-45 188.0 223 46.6
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 1.4e-38 166.0 206 44.2
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 7.9e-37 160.2 186 49.5
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 3.0e-36 158.3 214 40.7
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 8.7e-36 156.8 105 67.6
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.4e-33 149.4 173 53.2
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 2.2e-31 142.1 131 54.2
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 4.2e-30 137.9 123 56.9
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.6e-29 136.0 289 34.6
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 6.0e-29 134.0 168 49.4
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 5.3e-25 120.9 130 49.2
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 4.5e-24 117.9 97 61.9
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 5.5e-22 110.9 95 57.9
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 1.0e-20 106.7 76 69.7
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.1e-17 96.7 91 57.1
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 1.4e-14 86.3 118 38.1
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 2.1e-13 82.4 83 47.0
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 6.1e-13 80.9 84 47.6
Glyma.19G193000 Glycine max HOM05D006439 ORTHO05D046803 1.0e-12 80.1 66 62.1
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 8.8e-12 77.0 102 42.2
SEGI_31670 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 8.8e-12 77.0 111 39.6
Lj1g0014420 Lotus japonicus HOM05D006439 ORTHO05D046803 4.4e-11 74.7 72 58.3
Lj1g0023385 Lotus japonicus HOM05D006439 ORTHO05D008152 9.7e-11 73.6 65 58.5
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 1.7e-10 72.8 247 29.1
QL11p043997 Quercus lobata HOM05D006439 ORTHO05D008152 1.7e-10 72.8 44 79.5
Psat6g076200 Pisum sativum HOM05D006439 ORTHO05D008152 1.8e-09 69.3 48 60.4
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 5.3e-09 67.8 53 62.3
Lalb_Chr01g0012921 Lupinus albus HOM05D001219 ORTHO05D001017 1.5e-08 66.2 579 21.1
TPR.G29730 Trifolium pratense HOM05D001219 ORTHO05D001017 1.5e-08 66.2 489 20.7
Sabra03G0131300 Salix brachista HOM05D001219 ORTHO05D001017 4.5e-08 64.7 517 21.3
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 1.7e-07 62.8 174 24.1
arahy.Tifrunner.gnm1.ann1.F6HDT7 Arachis hypogaea HOM05D001219 ORTHO05D001017 2.9e-07 62.0 399 22.6
Nn8g39731 Nelumbo nucifera HOM05D001219 ORTHO05D001017 2.9e-07 62.0 412 22.3
Glyma.14G200300 Glycine max HOM05D002125 ORTHO05D002105 5.0e-07 61.2 201 25.4
Carub.0006s2650 Capsella rubella HOM05D001905 ORTHO05D001820 8.5e-07 60.5 397 23.2
arahy.Tifrunner.gnm1.ann1.JW8Z9M Arachis hypogaea HOM05D001219 ORTHO05D001017 1.4e-06 59.7 399 21.6
VMungo0331G0655 Vigna mungo HOM05D001219 ORTHO05D001017 1.9e-06 59.3 406 20.9
arahy.Tifrunner.gnm1.ann1.P2NKR4 Arachis hypogaea HOM05D001219 ORTHO05D001017 2.5e-06 58.9 551 22.0
Glyma.17G167800 Glycine max HOM05D001905 ORTHO05D001820 3.2e-06 58.5 378 21.7
Ca_04901_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 4.2e-06 58.2 473 20.9


User provided reference genes

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