Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.4e-44 182.6 93 100.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.3e-42 175.3 93 96.8
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 4.3e-41 171.0 92 93.5
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 9.8e-38 159.8 89 91.0
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.9e-37 158.3 89 88.8
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 3.7e-37 157.9 90 87.8
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 3.7e-37 157.9 90 88.9
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.9e-36 155.6 91 85.7
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 4.1e-36 154.5 86 89.5
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.1e-36 154.5 89 88.8
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 5.4e-36 154.1 89 87.6
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 5.4e-36 154.1 90 84.4
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 2.0e-35 152.1 89 86.5
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 2.7e-35 151.8 90 85.6
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 2.7e-35 151.8 89 85.4
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 2.7e-35 151.8 86 87.2
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 6.0e-35 150.6 90 83.3
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 7.8e-35 150.2 87 86.2
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.8e-35 150.2 89 87.6
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 7.8e-35 150.2 87 87.4
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 7.8e-35 150.2 93 81.7
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 7.8e-35 150.2 93 81.7
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 7.8e-35 150.2 89 84.3
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.0e-34 149.8 89 86.5
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.0e-34 149.8 87 88.5
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.3e-34 149.4 81 96.3
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.7e-34 149.1 91 81.3
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 2.3e-34 148.7 88 84.1
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 3.9e-34 147.9 89 82.0
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 5.0e-34 147.5 88 83.0
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 5.0e-34 147.5 87 86.2
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 5.0e-34 147.5 87 86.2
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 5.0e-34 147.5 89 84.3
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 5.0e-34 147.5 89 82.0
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.1e-33 146.4 86 82.6
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.9e-33 145.6 89 83.1
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.5e-33 145.2 81 91.4
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.5e-33 145.2 81 91.4
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.5e-33 145.2 81 91.4
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 3.3e-33 144.8 86 84.9
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 4.3e-33 144.4 89 82.0
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 5.6e-33 144.1 87 81.6
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 5.6e-33 144.1 82 86.6
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.2e-32 142.9 87 80.5
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.6e-32 142.5 88 83.0
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.6e-32 142.5 88 83.0
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 2.1e-32 142.1 85 82.4
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 2.1e-32 142.1 90 78.9
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 2.8e-32 141.7 89 79.8
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 2.8e-32 141.7 87 82.8
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.6e-32 141.4 86 80.2
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.6e-32 141.4 87 80.5
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 3.6e-32 141.4 87 79.3
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 4.7e-32 141.0 89 78.7
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 4.7e-32 141.0 87 79.3
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 4.7e-32 141.0 89 82.0
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 6.2e-32 140.6 85 88.2
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 6.2e-32 140.6 87 82.8
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 6.2e-32 140.6 87 82.8
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 8.1e-32 140.2 86 79.1
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.1e-31 139.8 91 79.1
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.1e-31 139.8 86 80.2
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.4e-31 139.4 84 83.3
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.3e-31 138.7 81 90.1
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.3e-31 138.7 91 78.0
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.3e-31 138.7 91 78.0
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 3.1e-31 138.3 91 78.0
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 4.0e-31 137.9 86 81.4
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 4.0e-31 137.9 87 78.2
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 8.9e-31 136.7 89 75.3
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 8.9e-31 136.7 84 81.0
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.2e-30 136.3 91 76.9
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.5e-30 136.0 88 79.5
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.5e-30 136.0 88 80.7
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.6e-30 135.2 90 75.6
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.4e-30 134.8 81 86.4
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 4.4e-30 134.4 83 80.7
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 5.8e-30 134.0 81 85.2
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 5.8e-30 134.0 88 79.5
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 5.8e-30 134.0 84 77.4
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 7.5e-30 133.7 86 77.9
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 9.8e-30 133.3 84 79.8
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.3e-29 132.9 81 81.5
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.3e-29 132.9 97 77.3
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 2.9e-29 131.7 81 79.0
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 4.9e-29 131.0 81 79.0
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 4.9e-29 131.0 81 79.0
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 4.9e-29 131.0 81 81.5
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 8.3e-29 130.2 81 80.2
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 8.3e-29 130.2 86 76.7
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.1e-28 129.8 78 83.3
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.4e-28 129.4 81 77.8
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.4e-28 129.4 81 77.8
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.4e-28 129.4 81 77.8
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.4e-28 129.4 84 73.8
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.9e-28 129.0 81 77.8
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 2.4e-28 128.6 81 82.7
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 3.2e-28 128.3 82 78.0
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 3.2e-28 128.3 82 78.0
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.2e-28 128.3 81 76.5
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 4.1e-28 127.9 81 76.5
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 4.1e-28 127.9 81 76.5
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 4.1e-28 127.9 88 71.6
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 4.1e-28 127.9 86 76.7
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 5.4e-28 127.5 81 76.5
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 9.2e-28 126.7 87 77.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.2e-27 126.3 79 79.7
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.6e-27 125.9 87 70.1
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.6e-27 125.9 87 70.1
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.6e-27 125.9 87 70.1
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.7e-27 125.2 73 89.0
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 3.5e-27 124.8 87 69.0
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 3.5e-27 124.8 87 69.0
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 3.5e-27 124.8 87 69.0
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 3.5e-27 124.8 87 69.0
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 3.5e-27 124.8 76 82.9
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 4.6e-27 124.4 91 74.7
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 7.8e-27 123.6 81 75.3
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.0e-26 123.2 81 77.8
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.0e-26 123.2 80 81.2
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.0e-26 123.2 84 78.6
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.3e-26 122.9 74 83.8
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 3.0e-26 121.7 78 83.3
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 5.6e-25 117.5 81 71.6
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 5.6e-25 117.5 81 71.6
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 5.6e-25 117.5 81 71.6
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 5.6e-25 117.5 83 66.3
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.6e-24 114.8 83 74.7
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 4.7e-24 114.4 80 77.5
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.8e-23 112.5 76 75.0
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.2e-21 105.5 73 76.7
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 8.4e-21 103.6 78 67.9
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 7.8e-19 97.1 58 81.0
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.0e-18 96.7 78 64.1
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.9e-18 94.7 87 57.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.9e-18 94.7 57 78.9
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 3.9e-18 94.7 79 58.2
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 7.3e-17 90.5 78 62.8
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.2e-16 89.7 81 61.7
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 6.2e-16 87.4 71 64.8
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 6.2e-16 87.4 71 64.8
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.8e-15 85.9 48 85.4
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.1e-12 76.6 51 70.6
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 3.2e-12 75.1 85 47.1
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.3e-08 63.2 40 77.5


User provided reference genes

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