Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 4938.2 2484 100.0
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 4467.1 2419 93.8
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 3915.5 2403 82.4
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 3806.5 2404 80.2
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 3273.8 2406 69.1
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 3261.5 2413 68.2
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 3247.2 2412 67.4
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3234.1 2408 68.1
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3214.5 2448 65.6
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3209.5 2448 65.7
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 3206.8 2425 66.2
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3206.0 2448 65.6
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3191.7 2441 65.5
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 3158.6 2402 66.8
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 3157.5 2416 66.7
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 3142.4 2410 66.3
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 3122.4 2424 65.7
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 3110.5 2418 65.9
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 3109.7 2417 65.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 3095.4 2449 64.8
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3094.3 2406 65.9
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 3091.6 2405 66.3
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 3089.3 2415 65.2
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 3043.1 2404 64.4
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3039.6 2404 64.4
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 3018.8 2400 63.7
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3011.5 2418 63.7
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3010.3 2441 62.7
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 3006.9 2450 63.1
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3004.2 2443 62.5
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2995.7 2406 63.8
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2991.1 2407 62.9
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2988.4 2412 63.0
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2988.4 2405 63.0
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2983.7 2401 63.0
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2969.1 2400 62.7
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2952.5 2410 62.3
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2941.4 2426 61.6
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2937.5 2447 61.3
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2931.4 2400 62.1
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2923.3 2405 61.8
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2897.1 2394 62.1
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2877.8 2431 61.8
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2869.3 2409 61.7
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2861.2 2076 69.7
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2823.9 2332 62.0
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2815.0 2414 59.8
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2801.2 2403 60.4
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2777.3 2407 60.5
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2759.9 2404 60.0
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2739.9 2414 58.6
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2653.2 2413 56.6
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2650.2 2433 57.0
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2628.6 2403 58.2
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2621.7 2428 56.2
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2621.7 2446 57.3
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2619.7 2421 56.2
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2618.6 2401 57.2
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2616.6 2414 56.4
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2610.9 2413 58.2
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2603.2 2414 56.6
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2599.3 2415 55.9
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2596.2 2430 56.3
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2594.3 2415 56.6
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2587.8 2412 55.8
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2587.0 2414 56.2
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2578.1 2414 56.1
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2575.8 2420 56.3
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2572.7 2411 56.4
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2572.3 2425 55.8
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2553.5 2413 55.0
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2542.7 2413 55.7
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2539.2 2406 55.1
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2535.8 2421 54.5
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2531.9 2406 55.2
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2529.6 2414 55.5
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2525.4 2394 55.5
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2523.0 2413 54.3
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2516.9 2411 54.3
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2515.3 2425 53.3
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2515.0 2421 54.4
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2492.6 2423 54.4
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2489.1 2434 53.9
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2471.8 2093 61.5
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2464.1 2093 61.4
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2454.5 2412 52.9
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2448.3 2404 52.5
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 2228.8 1822 61.6
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2195.6 2258 51.5
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2135.1 2390 48.0
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 2130.5 2440 47.7
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1963.0 1513 65.6
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1885.5 2477 43.6
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1877.1 1445 65.5
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1858.6 1445 64.8
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1813.5 1657 57.5
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1807.7 1381 66.8
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1801.9 2349 43.1
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1557.0 1456 56.1
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1512.3 1118 67.5
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1448.0 1381 55.5
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1374.0 1421 52.7
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1335.5 1519 47.5
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1256.9 1150 57.2
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1171.4 1065 56.2
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 0.0e+00 1077.8 1389 44.8
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 5.4e-308 1062.4 1036 53.6
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.6e-304 1050.8 1026 53.2
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.2e-283 981.5 2587 28.8
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 4.9e-269 932.9 922 53.1
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.6e-256 891.3 2133 30.9
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 1.2e-254 885.2 2175 30.8
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 4.3e-249 866.7 873 52.9
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.7e-248 864.8 1489 37.2
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 6.1e-235 819.7 801 53.4
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.8e-223 781.6 756 52.1
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 6.8e-210 736.5 2613 25.9
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 4.0e-178 630.9 540 55.7
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 3.3e-172 611.3 843 41.4
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.1e-132 479.9 476 53.6
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.8e-130 472.6 475 54.1
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 3.9e-125 454.9 332 67.5
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.9e-119 436.0 361 60.9
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 5.9e-113 414.5 260 77.7
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 3.5e-97 362.1 332 53.9
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 7.5e-92 344.4 319 58.6
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 2.1e-86 326.2 395 45.1
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 4.1e-82 312.0 358 48.3
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.7e-80 306.6 440 39.5
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 5.6e-71 275.0 216 60.2
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 3.1e-69 269.2 486 34.2
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 4.1e-66 258.8 436 36.5
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 9.9e-60 237.7 368 39.4
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 3.8e-59 235.7 150 76.0
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.6e-57 230.3 277 48.7
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 2.1e-57 229.9 314 42.7
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.0e-49 201.8 274 46.0
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 3.3e-47 196.1 122 77.9
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 5.6e-47 195.3 146 67.1
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.8e-45 190.3 196 50.0
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 5.3e-45 188.7 189 58.2
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 4.9e-43 182.2 148 62.8
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 4.6e-41 175.6 131 73.3
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 2.3e-40 173.3 811 23.6
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.3e-38 167.5 110 76.4
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.8e-37 163.7 241 39.0
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 4.6e-33 149.1 148 53.4
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 5.1e-32 145.6 314 35.0
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 5.7e-31 142.1 96 70.8
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 5.5e-26 125.6 125 49.6
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.2e-25 124.4 289 31.1
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 2.3e-24 120.2 83 72.3
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 2.3e-24 120.2 148 47.3
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 6.7e-24 118.6 140 46.4
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 9.7e-23 114.8 241 31.5
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.2e-19 103.6 197 36.5
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 3.6e-17 96.3 118 43.2
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 1.0e-16 94.7 128 43.8
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 3.0e-16 93.2 98 48.0
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 1.5e-15 90.9 97 44.3
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 2.0e-15 90.5 84 54.8
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 9.4e-10 71.6 95 41.1
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.6e-09 69.7 73 49.3
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 3.0e-08 66.6 69 50.7
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 3.0e-08 66.6 56 57.1
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 6.7e-08 65.5 42 81.0
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.5e-07 64.3 52 59.6
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.5e-07 64.3 52 59.6
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.5e-07 64.3 52 59.6
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 9.7e-07 61.6 56 51.8
Psat0ss3938g0040 Pisum sativum HOM05D001673 ORTHO05D000895 1.3e-06 61.2 39 69.2


User provided reference genes

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