Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 3.1e-156 555.1 279 100.0
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 7.5e-150 533.9 279 96.4
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.5e-105 386.7 295 70.5
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 2.5e-92 342.8 274 67.9
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.1e-67 258.5 174 75.3
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.1e-67 258.5 174 75.3
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.4e-66 257.3 174 75.3
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.4e-66 257.3 174 75.3
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.4e-66 257.3 264 55.3
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.7e-66 255.0 173 74.6
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 6.7e-66 255.0 190 66.8
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 5.7e-65 251.9 197 64.0
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 8.2e-64 248.1 163 73.6
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.4e-63 247.3 164 72.6
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 5.3e-63 245.4 215 61.9
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.6e-62 243.8 179 69.3
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.6e-62 243.0 183 68.3
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 3.5e-62 242.7 159 74.2
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 7.7e-62 241.5 268 50.7
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.7e-61 240.4 160 72.5
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 2.9e-61 239.6 168 70.2
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 3.8e-61 239.2 152 76.3
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 5.0e-61 238.8 208 62.0
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.1e-60 237.7 167 70.1
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 4.2e-60 235.7 150 76.7
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 4.2e-60 235.7 229 55.9
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 1.2e-59 234.2 221 58.4
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 2.1e-59 233.4 226 57.5
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 6.1e-59 231.9 207 60.4
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 8.0e-59 231.5 157 74.5
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.8e-58 230.3 221 54.8
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.3e-58 229.9 160 70.6
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.3e-58 229.9 160 70.6
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.2e-57 227.6 157 71.3
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.0e-57 226.9 180 63.9
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.0e-57 226.9 179 64.2
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 2.6e-57 226.5 182 61.5
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 2.6e-57 226.5 231 55.0
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 9.7e-57 224.6 188 57.4
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 9.7e-57 224.6 181 62.4
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.7e-56 223.8 179 63.1
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.8e-56 223.0 159 69.8
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 6.3e-56 221.9 164 68.9
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 8.2e-56 221.5 163 68.7
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.1e-55 221.1 179 63.1
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.8e-55 220.3 218 56.0
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.1e-55 219.5 191 57.1
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 3.1e-55 219.5 187 61.5
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 1.2e-54 217.6 180 61.7
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.6e-54 217.2 193 57.0
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 2.7e-54 216.5 183 61.2
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 3.5e-54 216.1 163 68.1
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 4.5e-54 215.7 183 61.7
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 4.5e-54 215.7 201 57.2
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 4.5e-54 215.7 166 68.1
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 5.9e-54 215.3 163 67.5
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 7.7e-54 214.9 163 67.5
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 1.3e-53 214.2 183 60.1
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 1.3e-53 214.2 183 60.1
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 1.3e-53 214.2 183 60.1
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.7e-53 213.8 166 67.5
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 2.2e-53 213.4 168 60.1
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 2.2e-53 213.4 186 60.8
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.9e-53 213.0 165 63.6
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 2.9e-53 213.0 184 60.9
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 2.9e-53 213.0 173 63.6
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 2.9e-53 213.0 173 63.6
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 5.0e-53 212.2 165 63.6
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 5.0e-53 212.2 148 71.6
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 6.5e-53 211.8 169 62.1
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 8.5e-53 211.5 159 67.3
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.1e-52 211.1 168 60.7
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.9e-52 210.3 155 63.9
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.9e-52 210.3 160 69.4
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 2.5e-52 209.9 169 60.9
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 2.5e-52 209.9 169 60.9
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 3.2e-52 209.5 169 60.9
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 6.1e-51 205.3 169 61.5
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 6.1e-51 205.3 156 69.2
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 8.0e-51 204.9 158 63.3
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 4.0e-50 202.6 203 53.7
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 8.8e-50 201.4 126 74.6
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 3.4e-49 199.5 126 73.8
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 4.4e-49 199.1 183 53.6
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 4.8e-48 195.7 121 76.9
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.8e-47 193.7 194 51.0
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.4e-47 193.4 162 60.5
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 4.1e-47 192.6 157 58.6
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 8.6e-45 184.9 158 61.4
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 2.5e-44 183.3 215 49.8
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 2.5e-44 183.3 160 61.9
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.2e-43 181.0 223 47.5
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 2.8e-43 179.9 181 52.5
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 4.0e-42 176.0 159 57.9
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.2e-41 174.5 161 56.5
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.5e-41 174.1 164 53.0
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.5e-41 174.1 164 53.0
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 2.0e-41 173.7 159 57.2
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 7.5e-41 171.8 181 53.6
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 8.3e-40 168.3 205 47.8
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 4.1e-39 166.0 195 47.2
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 5.4e-39 165.6 155 52.9
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 3.8e-37 159.5 150 56.0
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.1e-36 157.9 133 57.9
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 7.3e-36 155.2 180 51.7
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 9.5e-36 154.8 145 55.9
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.2e-33 147.9 133 54.9
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 3.4e-33 146.4 102 62.7
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 3.7e-32 142.9 104 62.5
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 4.9e-32 142.5 164 48.2
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 8.3e-32 141.7 110 63.6
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.8e-31 140.6 122 63.1
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 5.4e-31 139.0 101 68.3
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 8.9e-26 121.7 93 62.4
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.6e-25 120.2 95 57.9
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 4.9e-24 115.9 80 62.5
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 3.9e-21 106.3 104 52.9
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.9e-20 104.0 91 60.4
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 3.7e-16 89.7 90 52.2
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 3.5e-14 83.2 69 53.6
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 6.0e-14 82.4 111 50.5
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.5e-12 77.8 121 37.2
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 6.2e-11 72.4 120 33.3
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 3.4e-09 66.6 46 60.9
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 2.9e-08 63.5 121 38.0
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 4.9e-08 62.8 74 44.6
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 4.9e-08 62.8 63 47.6
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 4.9e-08 62.8 74 44.6
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 8.4e-08 62.0 63 47.6
BraA05t21433Z Brassica rapa HOM05D006505 ORTHO05D008086 2.1e-06 57.4 49 49.0
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 7.8e-06 55.5 121 31.4


User provided reference genes

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