Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 0.0e+00 1461.4 740 100.0
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 0.0e+00 1264.6 810 83.6
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 0.0e+00 1196.0 741 81.6
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 0.0e+00 1152.5 738 80.8
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 1.6e-276 956.1 747 66.7
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 3.6e-276 954.9 741 66.4
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 1.1e-275 953.4 741 66.1
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 5.1e-270 934.5 742 65.2
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 8.9e-267 923.7 742 64.2
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 5.6e-261 904.4 741 63.8
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.3e-257 893.3 743 62.3
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.2e-257 892.5 744 63.0
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 2.9e-257 892.1 745 62.8
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.6e-255 886.3 732 63.1
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 2.1e-255 885.9 732 63.1
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 4.3e-253 878.2 738 64.0
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 1.6e-252 876.3 739 64.0
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 2.1e-252 875.9 738 63.7
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 2.1e-252 875.9 746 62.2
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 1.4e-251 873.2 740 62.6
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 6.9e-251 870.9 742 62.4
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 2.6e-250 869.0 739 60.6
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 3.2e-248 862.1 709 65.0
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 2.5e-245 852.4 743 60.2
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.3e-244 850.1 742 59.4
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 8.1e-244 847.4 738 59.8
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 1.1e-243 847.0 738 59.5
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 5.3e-243 844.7 740 60.9
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 9.9e-242 840.5 667 65.7
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 3.8e-241 838.6 751 59.1
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 3.2e-240 835.5 737 58.5
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 6.2e-236 821.2 737 59.7
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 1.3e-233 813.5 740 58.0
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.9e-233 812.4 763 58.8
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 4.5e-226 788.5 746 56.7
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 2.9e-225 785.8 644 62.1
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 9.3e-224 780.8 696 60.2
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 2.7e-223 779.2 729 57.8
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 5.3e-219 765.0 680 59.6
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 2.5e-216 756.1 774 55.3
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 7.9e-215 751.1 739 56.3
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 2.3e-214 749.6 750 52.9
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 3.9e-214 748.8 747 52.9
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 8.8e-214 747.7 738 55.8
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 2.6e-213 746.1 788 53.0
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 3.3e-213 745.7 740 53.5
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 4.1e-211 738.8 734 55.6
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 1.5e-210 736.9 742 52.7
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 1.7e-209 733.4 830 50.6
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 5.0e-209 731.9 798 51.9
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 1.4e-208 730.3 728 54.1
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 1.9e-208 729.9 741 51.6
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 2.3e-206 723.0 736 51.1
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 3.0e-206 722.6 725 53.5
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 6.7e-206 721.5 723 53.8
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 3.3e-205 719.2 726 54.5
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 5.7e-205 718.4 730 53.8
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 9.7e-205 717.6 733 50.9
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 2.8e-204 716.1 749 51.8
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 3.7e-204 715.7 756 52.5
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 1.8e-203 713.4 741 53.2
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 5.3e-203 711.8 779 49.8
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 1.1e-200 704.1 611 61.5
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.5e-200 703.7 797 48.6
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 4.4e-197 692.2 734 51.6
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 2.9e-193 679.5 700 51.3
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.1e-192 677.6 718 52.1
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 8.8e-190 667.9 726 51.2
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 9.1e-187 657.9 710 50.7
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 4.5e-186 655.6 714 49.9
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 1.7e-185 653.7 747 48.5
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 2.9e-185 652.9 714 51.3
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 8.6e-185 651.4 709 51.1
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 3.3e-184 649.4 747 48.9
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 7.2e-184 648.3 749 49.3
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 9.5e-184 647.9 732 49.2
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 5.9e-178 628.6 735 46.9
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 5.0e-177 625.5 566 56.7
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 3.3e-176 622.9 730 47.4
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 5.2e-166 589.0 731 44.2
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 6.6e-161 572.0 681 45.4
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 8.6e-161 571.6 518 56.6
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 6.6e-153 545.4 489 58.5
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 9.9e-149 531.6 547 53.6
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 1.5e-144 517.7 587 51.4
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 1.5e-141 507.7 367 68.7
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.3e-140 504.6 446 59.9
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 6.4e-140 502.3 576 49.8
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 8.1e-135 485.3 393 63.9
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 1.1e-131 474.9 452 56.2
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 4.6e-130 469.5 586 47.1
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.1e-128 464.9 423 56.7
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 1.2e-125 454.9 738 40.0
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.7e-114 417.2 370 60.0
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 1.6e-111 407.9 562 44.0
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.8e-111 407.1 335 60.6
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 7.7e-109 399.1 372 57.5
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 1.1e-104 385.2 508 46.7
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 7.4e-104 382.5 350 57.1
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.5e-101 374.8 279 68.1
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 2.6e-101 374.0 361 56.0
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 8.5e-100 369.0 337 57.9
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 8.5e-92 342.4 693 32.6
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 1.1e-91 342.0 824 29.9
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 1.2e-82 312.0 710 30.1
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 2.6e-80 304.3 252 62.3
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 4.8e-79 300.1 253 63.6
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 3.5e-77 293.9 874 27.9
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.9e-75 288.1 196 72.4
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 3.0e-65 254.2 718 31.2
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 5.2e-65 253.4 263 52.9
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 2.6e-64 251.1 277 50.9
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 2.2e-63 248.1 718 31.3
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 3.5e-61 240.7 163 73.0
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 3.3e-59 234.2 271 49.8
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 1.8e-57 228.4 160 68.8
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 4.0e-57 227.3 889 23.4
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 4.1e-54 217.2 160 68.1
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.4e-48 197.6 140 71.4
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 7.6e-32 143.3 119 56.3
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 7.1e-30 136.7 246 39.4
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.6e-29 135.6 98 71.4
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 3.9e-28 131.0 210 38.1
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 4.5e-16 90.9 168 38.7
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 8.4e-15 86.7 173 34.1
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 1.9e-14 85.5 178 32.6
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 5.4e-14 84.0 343 24.5
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 4.5e-08 64.3 483 21.5
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 5.8e-08 63.9 59 61.0
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.2e-07 62.0 98 39.8
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 2.2e-07 62.0 129 34.1
Rhsim03G0224400 Rhododendron simsii HOM05D005820 ORTHO05D007116 2.2e-07 62.0 108 45.4
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.4e-06 59.3 35 74.3


User provided reference genes

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