Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 8.3e-35 149.8 76 100.0
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 9.2e-26 119.8 71 84.5
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 9.2e-26 119.8 71 84.5
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 2.7e-25 118.2 71 83.1
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 4.7e-22 107.5 71 76.1
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 1.8e-21 105.5 71 74.6
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 4.9e-19 97.4 68 72.1
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.4e-13 78.6 60 61.7
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 4.0e-13 77.8 63 55.6
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.5e-12 75.9 63 54.0
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 1.5e-12 75.9 63 54.0
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.6e-12 75.1 60 58.3
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 3.4e-12 74.7 65 53.8
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 4.4e-12 74.3 71 46.5
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 4.4e-12 74.3 57 59.6
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.3e-11 72.8 53 66.0
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.3e-11 72.8 68 48.5
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.7e-11 72.4 64 48.4
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.2e-11 72.0 53 64.2
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 2.2e-11 72.0 66 50.0
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.9e-11 71.6 73 54.8
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 6.4e-11 70.5 66 54.5
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 8.4e-11 70.1 64 50.0
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 8.4e-11 70.1 71 45.1
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.1e-10 69.7 59 61.0
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.1e-10 69.7 66 56.1
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.4e-10 69.3 60 55.0
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.4e-10 69.3 59 61.0
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 2.4e-10 68.6 78 44.9
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 2.4e-10 68.6 78 44.9
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 4.1e-10 67.8 59 57.6
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 4.1e-10 67.8 58 51.7
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 5.4e-10 67.4 66 51.5
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 7.1e-10 67.0 67 49.3
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 7.1e-10 67.0 65 47.7
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 7.1e-10 67.0 68 45.6
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 7.1e-10 67.0 64 50.0
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 9.2e-10 66.6 68 45.6
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.2e-09 66.2 67 49.3
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.2e-09 66.2 71 43.7
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 2.7e-09 65.1 63 54.0
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 4.6e-09 64.3 71 42.3
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 6.0e-09 63.9 57 59.6
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 7.8e-09 63.5 52 61.5
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.3e-08 62.8 67 46.3
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 2.3e-08 62.0 62 45.2
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 3.0e-08 61.6 72 44.4
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 3.0e-08 61.6 72 44.4
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 3.9e-08 61.2 71 45.1
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 5.1e-08 60.8 46 63.0
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 5.1e-08 60.8 42 59.5
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 5.1e-08 60.8 46 58.7
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 6.6e-08 60.5 35 71.4
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 6.6e-08 60.5 70 47.1
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.7e-08 60.1 72 43.1
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 8.7e-08 60.1 53 54.7
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 8.7e-08 60.1 65 50.8
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 8.7e-08 60.1 59 50.8
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 8.7e-08 60.1 52 57.7
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.1e-07 59.7 51 52.9
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.1e-07 59.7 67 46.3
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.1e-07 59.7 59 52.5
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.1e-07 59.7 59 54.2
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.5e-07 59.3 46 60.9
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.5e-07 59.3 52 55.8
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.9e-07 58.9 52 50.0
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 1.9e-07 58.9 56 53.6
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 2.5e-07 58.5 36 69.4
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 3.3e-07 58.2 31 74.2
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.3e-07 57.8 53 52.8
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 4.3e-07 57.8 59 50.8
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 4.3e-07 57.8 72 41.7
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 4.3e-07 57.8 76 42.1
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 4.3e-07 57.8 39 66.7
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 5.6e-07 57.4 58 50.0
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 7.3e-07 57.0 59 49.2
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 7.3e-07 57.0 33 72.7
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 7.3e-07 57.0 33 72.7
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 9.6e-07 56.6 62 48.4
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 9.6e-07 56.6 52 51.9
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 9.6e-07 56.6 55 56.4
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 1.2e-06 56.2 57 49.1
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.2e-06 56.2 79 39.2
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.6e-06 55.8 57 50.9
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.6e-06 55.8 52 51.9
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.1e-06 55.5 36 63.9
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 2.8e-06 55.1 64 45.3
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.8e-06 55.1 36 66.7
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 3.6e-06 54.7 51 49.0
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 3.6e-06 54.7 51 60.8
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 3.6e-06 54.7 60 50.0
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.7e-06 54.3 57 50.9
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 6.2e-06 53.9 59 49.2
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.2e-06 53.9 59 49.2
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 8.1e-06 53.5 37 64.9
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 8.1e-06 53.5 43 53.5


User provided reference genes

Program Settings