Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 2.2e-163 578.9 295 100.0
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 9.1e-146 520.4 287 93.7
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 1.8e-138 496.1 283 91.5
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 5.0e-128 461.5 271 86.7
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 5.5e-119 431.4 271 83.0
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 2.6e-116 422.5 279 81.7
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 6.1e-110 401.4 272 79.4
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 8.0e-110 401.0 272 79.0
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 5.2e-109 398.3 257 79.8
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.3e-107 393.7 279 75.6
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.9e-107 392.5 257 79.8
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.1e-106 390.6 275 75.3
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 1.9e-106 389.8 273 76.9
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.9e-106 389.8 271 76.4
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 9.2e-106 387.5 272 75.7
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 9.2e-106 387.5 271 75.6
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.6e-105 386.7 272 75.4
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.7e-105 386.0 271 76.0
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 2.7e-105 386.0 271 75.6
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 6.0e-105 384.8 245 81.2
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 1.7e-104 383.3 275 74.5
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.3e-104 382.9 273 75.5
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 3.0e-104 382.5 214 87.4
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 3.9e-104 382.1 274 73.4
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 5.0e-104 381.7 278 75.5
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 6.6e-104 381.3 241 79.3
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.1e-103 380.6 280 74.6
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 1.5e-103 380.2 272 74.6
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.5e-103 379.4 273 75.8
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.3e-103 379.0 274 75.2
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 4.3e-103 378.6 276 74.3
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 4.3e-103 378.6 219 85.4
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 1.2e-102 377.1 262 74.8
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.1e-102 376.3 273 72.5
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 3.6e-102 375.6 278 72.7
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 3.6e-102 375.6 275 72.0
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 4.7e-102 375.2 252 76.2
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 8.0e-102 374.4 223 83.4
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.4e-101 373.6 281 70.5
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.4e-101 373.6 261 75.5
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.3e-101 372.9 275 72.4
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 2.3e-101 372.9 267 73.0
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 3.1e-101 372.5 257 75.5
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 4.0e-101 372.1 255 75.7
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.2e-101 371.7 303 65.3
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 6.8e-101 371.3 278 70.9
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 6.8e-101 371.3 274 71.2
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.2e-100 370.5 272 73.2
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 2.0e-100 369.8 262 72.5
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 2.0e-100 369.8 265 73.2
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 3.4e-100 369.0 271 73.4
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 4.4e-100 368.6 273 70.7
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.4e-100 368.6 270 71.9
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 5.8e-100 368.2 273 72.2
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 7.5e-100 367.9 257 75.5
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 7.5e-100 367.9 274 70.8
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 9.8e-100 367.5 280 69.6
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 9.8e-100 367.5 278 70.1
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 1.3e-99 367.1 230 80.9
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.3e-99 367.1 275 71.3
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 1.3e-99 367.1 273 74.7
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.7e-99 366.7 273 72.5
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.9e-99 365.9 260 72.7
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 3.7e-99 365.5 252 74.6
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 3.7e-99 365.5 276 69.9
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 4.9e-99 365.2 272 72.8
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 4.9e-99 365.2 274 70.4
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.1e-98 364.0 272 71.0
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.4e-98 363.6 216 81.9
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.9e-98 363.2 216 83.8
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 2.4e-98 362.8 268 70.9
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 2.4e-98 362.8 259 73.7
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 4.1e-98 362.1 276 70.7
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 4.1e-98 362.1 237 76.4
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 5.4e-98 361.7 267 71.9
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 7.0e-98 361.3 259 73.4
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 7.0e-98 361.3 271 69.4
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 9.2e-98 360.9 260 74.6
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 9.2e-98 360.9 274 71.9
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 9.2e-98 360.9 274 69.7
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.2e-97 360.5 262 74.4
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 1.2e-97 360.5 261 70.1
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.2e-97 360.5 297 66.3
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.2e-97 360.5 273 69.6
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 1.6e-97 360.1 279 68.5
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.6e-97 360.1 254 73.2
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 3.5e-97 359.0 253 73.1
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.6e-97 358.6 307 62.9
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 4.6e-97 358.6 216 83.8
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 7.8e-97 357.8 220 80.9
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 7.8e-97 357.8 275 70.5
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 7.8e-97 357.8 274 69.3
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 1.3e-96 357.1 277 69.7
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.7e-96 356.7 257 70.4
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.7e-96 356.7 257 70.4
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 5.1e-96 355.1 249 73.5
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 8.6e-96 354.4 188 91.5
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.1e-95 354.0 228 80.7
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.1e-95 354.0 217 81.6
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.5e-95 353.6 220 82.7
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.5e-95 353.6 275 68.7
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.9e-95 353.2 217 80.2
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 1.9e-95 353.2 260 72.7
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 4.3e-95 352.1 264 70.5
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 3.6e-94 349.0 209 82.3
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.4e-93 347.1 244 73.4
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.8e-93 346.7 269 69.5
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 8.9e-93 344.4 235 75.7
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.2e-92 344.0 279 68.1
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 5.8e-92 341.7 257 70.0
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.9e-91 339.3 257 71.2
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 7.1e-90 334.7 275 63.6
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 3.5e-89 332.4 266 69.2
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 5.1e-88 328.6 278 68.7
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 7.3e-87 324.7 215 77.2
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 2.8e-86 322.8 188 81.9
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 4.7e-86 322.0 188 82.4
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.4e-84 315.8 304 60.5
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 7.6e-84 314.7 273 64.1
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.6e-84 314.7 319 58.0
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-81 307.0 239 66.1
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 3.5e-81 305.8 188 79.3
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 4.6e-81 305.4 192 79.2
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 7.8e-81 304.7 256 64.8
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.0e-80 304.3 156 92.3
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 1.6e-78 297.0 160 90.0
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.7e-78 295.4 301 56.5
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 4.7e-78 295.4 237 70.0
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.4e-77 293.9 285 59.6
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 4.0e-77 292.4 155 90.3
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 4.4e-76 288.9 195 74.4
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.7e-75 287.0 230 69.1
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 1.1e-74 284.3 212 67.0
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 3.2e-74 282.7 156 87.2
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 4.2e-74 282.3 225 64.4
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.1e-73 280.0 280 58.9
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 1.6e-70 270.4 149 87.2
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 9.9e-68 261.2 135 92.6
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.7e-67 260.4 252 59.5
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 8.4e-67 258.1 216 64.4
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 1.8e-64 250.4 230 62.2
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 3.0e-64 249.6 211 65.9
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.1e-64 248.8 162 77.2
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.6e-62 243.8 149 80.5
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.1e-61 241.1 190 71.6
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 3.8e-59 232.6 237 56.1
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 8.7e-56 221.5 136 75.7
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.5e-55 220.7 157 72.6
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 1.6e-54 217.2 252 44.0
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 3.2e-50 203.0 179 62.0
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.0e-48 198.0 132 78.8
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 5.7e-47 192.2 350 39.4
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 4.3e-39 166.0 145 60.0
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.2e-35 153.7 180 42.2
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 2.7e-33 146.7 192 40.1
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 8.8e-32 141.7 84 82.1
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 2.6e-31 140.2 207 39.6
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 2.6e-28 130.2 140 58.6
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 1.3e-22 111.3 62 83.9
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 2.2e-22 110.5 62 83.9
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 1.1e-18 98.2 59 81.4
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.0e-16 91.7 155 41.9
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 5.2e-16 89.4 84 53.6
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.5e-10 69.3 36 88.9
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 7.2e-10 68.9 40 80.0
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 7.2e-10 68.9 50 70.0
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 7.2e-10 68.9 40 80.0
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 2.1e-09 67.4 118 37.3
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 4.0e-08 63.2 32 87.5
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.4e-07 60.1 42 69.0
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.2e-06 57.4 34 79.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 4.8e-06 56.2 111 34.2


User provided reference genes

Program Settings