Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 0.0e+00 1223.4 645 100.0
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 0.0e+00 1080.1 663 88.2
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 0.0e+00 1077.0 663 87.9
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.6e-283 979.2 662 80.1
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.6e-256 889.4 665 75.8
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 3.4e-246 855.1 669 71.7
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 4.2e-244 848.2 666 68.6
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.5e-241 839.7 668 68.7
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 7.3e-241 837.4 667 69.9
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 4.2e-236 821.6 673 68.4
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 7.1e-236 820.8 691 67.6
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 9.3e-236 820.5 691 67.4
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.6e-235 819.7 691 67.6
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 4.6e-235 818.1 662 69.2
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 7.4e-233 810.8 662 68.9
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 9.6e-233 810.4 663 68.0
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.8e-232 808.9 666 67.4
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 3.6e-232 808.5 657 68.3
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.6e-230 802.4 674 66.6
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.7e-229 799.7 665 67.2
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 2.9e-229 798.9 668 67.1
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 2.4e-228 795.8 662 67.7
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 4.2e-228 795.0 664 67.0
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 9.3e-228 793.9 660 66.8
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 9.3e-228 793.9 664 66.7
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 6.0e-227 791.2 645 68.1
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 7.9e-227 790.8 646 68.0
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 6.7e-226 787.7 628 68.5
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 4.8e-224 781.6 661 65.8
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 6.2e-224 781.2 649 66.3
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 4.0e-223 778.5 698 64.2
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 5.3e-223 778.1 589 70.3
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 5.8e-222 774.6 662 65.4
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 4.9e-221 771.5 664 64.5
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 2.5e-220 769.2 652 65.5
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 1.6e-219 766.5 682 63.5
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 3.5e-219 765.4 667 64.3
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 5.1e-218 761.5 675 64.0
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 3.3e-217 758.8 675 63.4
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 3.1e-215 752.3 666 62.6
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 6.9e-215 751.1 655 64.3
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.0e-213 747.3 644 64.3
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.3e-213 746.9 693 61.9
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.7e-213 746.5 673 63.0
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 2.2e-213 746.1 673 64.2
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.4e-212 743.4 669 63.2
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.4e-212 743.4 644 63.8
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.6e-211 740.0 647 63.5
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.3e-210 736.1 630 63.2
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 2.3e-210 736.1 669 61.4
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.0e-210 735.7 694 61.2
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 5.1e-210 734.9 675 62.5
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.1e-210 734.9 692 61.3
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.1e-209 733.8 692 61.3
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 5.7e-209 731.5 668 62.3
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 3.1e-207 725.7 677 61.2
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 5.3e-207 724.9 655 61.8
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 5.3e-207 724.9 654 61.9
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.2e-206 723.8 670 63.6
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 2.2e-205 719.5 580 65.5
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 3.6e-203 712.2 655 61.1
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 3.9e-202 708.8 672 61.6
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.2e-200 703.0 661 58.9
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 6.3e-200 701.4 662 58.6
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 2.6e-198 696.0 669 59.6
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 1.0e-197 694.1 546 67.0
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 3.8e-197 692.2 593 62.9
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 5.0e-197 691.8 640 60.0
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 4.2e-196 688.7 640 59.8
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 9.4e-196 687.6 655 60.0
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 1.2e-195 687.2 647 59.2
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 2.7e-195 686.0 669 57.5
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 6.1e-195 684.9 655 60.3
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 3.0e-194 682.6 660 59.4
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 3.9e-194 682.2 660 59.4
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 1.1e-193 680.6 658 58.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 2.0e-193 679.9 660 59.2
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 2.6e-193 679.5 650 58.3
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.3e-193 679.1 615 63.1
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 9.7e-193 677.6 646 59.1
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 2.8e-192 676.0 619 59.9
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.1e-191 674.1 631 60.4
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 1.4e-191 673.7 642 59.3
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 2.4e-191 672.9 640 58.9
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 4.1e-191 672.2 651 57.8
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 3.2e-188 662.5 592 65.0
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 5.5e-188 661.8 588 60.5
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 1.6e-187 660.2 672 58.8
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 2.3e-186 656.4 644 58.1
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.6e-185 652.9 654 57.6
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.7e-184 650.2 662 58.3
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.1e-183 645.6 616 61.0
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 5.0e-181 638.6 513 65.5
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 2.7e-179 632.9 669 58.9
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 2.0e-177 626.7 666 55.4
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 4.8e-176 622.1 631 55.8
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 8.3e-168 594.7 667 55.0
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.4e-167 594.0 662 53.5
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.2e-163 580.9 661 52.8
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.1e-159 567.8 666 50.3
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.9e-152 542.3 448 68.1
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.9e-135 487.3 540 52.2
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 6.0e-134 482.3 580 47.2
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 3.1e-130 469.9 624 46.6
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 6.2e-123 445.7 664 43.2
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 9.9e-121 438.3 656 42.2
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 9.3e-119 431.8 358 64.0
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 3.2e-111 406.8 666 43.4
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 6.5e-104 382.5 346 62.7
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 1.5e-100 371.3 643 37.0
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 4.3e-100 369.8 548 44.2
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 2.8e-99 367.1 424 54.0
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 6.1e-94 349.4 428 50.5
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.0e-93 347.1 297 62.3
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 5.7e-92 342.8 324 57.1
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.5e-79 300.8 252 63.1
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 6.7e-69 266.2 387 42.6
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 2.2e-67 261.2 648 28.9
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 2.7e-65 254.2 720 28.2
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.0e-53 213.8 150 71.3
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.6e-46 191.8 260 46.5
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 6.1e-46 189.9 254 48.0
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.4e-45 188.7 625 27.4
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 3.5e-41 174.1 177 55.4
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 6.6e-40 169.9 180 55.6
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 5.2e-37 160.2 254 43.3
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 5.2e-37 160.2 99 81.8
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 1.5e-36 158.7 254 42.9
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 7.5e-36 156.4 114 67.5
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 2.3e-32 144.8 98 69.4
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 1.1e-29 136.0 138 50.0
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.2e-28 132.5 190 44.7
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.5e-28 132.1 153 53.6
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 5.8e-28 130.2 124 55.6
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 5.1e-24 117.1 83 68.7
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 5.1e-24 117.1 303 30.0
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 2.5e-23 114.8 595 24.5
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 1.4e-18 99.0 83 66.3
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 3.2e-18 97.8 125 46.4
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 9.6e-15 86.3 153 41.2
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.6e-14 85.5 120 44.2
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 6.2e-14 83.6 142 36.6
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 6.2e-14 83.6 142 36.6
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 6.2e-14 83.6 142 36.6
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.4e-13 82.4 142 35.9
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.4e-13 82.4 142 35.9
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 1.8e-13 82.0 142 35.9
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 3.4e-12 77.8 99 51.5
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 6.4e-11 73.6 45 71.1
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 8.4e-11 73.2 44 75.0
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 1.7e-08 65.5 53 54.7
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 1.7e-08 65.5 53 54.7
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 8.7e-08 63.2 145 35.2
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 4.3e-07 60.8 72 50.0


User provided reference genes

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