Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 7.1e-78 293.9 152 100.0
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 3.1e-65 251.9 165 81.8
QL05p033878 Quercus lobata HOM05D020328 ORTHO05D009969 1.1e-25 120.6 163 45.4
QL10p050899 Quercus lobata HOM05D006887 ORTHO05D009969 7.0e-17 91.3 159 34.6
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 5.6e-14 81.6 150 38.0
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 4.7e-13 78.6 140 40.0
Dinv40186 Davidia involucrata HOM05D009853 ORTHO05D009969 8.9e-12 74.3 128 39.1
Oeu048605.1 Olea europaea HOM05D041624 ORTHO05D009969 3.4e-11 72.4 69 44.9
Oeu048608.1 Olea europaea HOM05D041624 ORTHO05D009969 3.4e-11 72.4 69 44.9
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 4.4e-11 72.0 157 32.5
Actinidia20182 Actinidia chinensis HOM05D011412 ORTHO05D009969 5.7e-11 71.6 135 33.3
Actinidia23430 Actinidia chinensis HOM05D006887 ORTHO05D009969 9.8e-11 70.9 129 34.1
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.8e-11 70.9 62 54.8
Cpa.g.sc365.3 Carica papaya HOM05D006887 ORTHO05D009969 1.3e-10 70.5 132 33.3
Rhsim08G0003700 Rhododendron simsii HOM05D000307 ORTHO05D000166 1.3e-10 70.5 143 32.2
Manes.12G002901 Manihot esculenta HOM05D015295 ORTHO05D004325 2.2e-10 69.7 138 34.8
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.9e-10 68.6 135 37.8
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.9e-10 68.6 135 37.8
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.9e-10 68.6 135 37.8
Dinv30482 Davidia involucrata HOM05D009853 ORTHO05D009969 1.1e-09 67.4 146 30.1
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.1e-09 67.4 153 35.3
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 1.4e-09 67.0 138 31.2
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 2.4e-09 66.2 52 46.2
Oeu029234.1 Olea europaea HOM05D011412 ORTHO05D009969 2.4e-09 66.2 129 27.1
Oeu029235.1 Olea europaea HOM05D011412 ORTHO05D009969 2.4e-09 66.2 129 27.1
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 3.2e-09 65.9 156 31.4
Oeu031750.4 Olea europaea HOM05D041624 ORTHO05D009969 3.2e-09 65.9 142 31.0
Peaxi162Scf00011g00077 Petunia axillaris HOM05D009853 ORTHO05D009969 3.2e-09 65.9 68 42.6
Dinv38023 Davidia involucrata HOM05D011412 ORTHO05D009969 4.1e-09 65.5 123 34.1
Potri.008G020300 Populus trichocarpa HOM05D015295 ORTHO05D009969 4.1e-09 65.5 134 35.8
Manes.12G002600 Manihot esculenta HOM05D015295 ORTHO05D009969 5.4e-09 65.1 132 35.6
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 9.2e-09 64.3 147 29.9
Sabra15G0102400 Salix brachista HOM05D006887 ORTHO05D009969 9.2e-09 64.3 157 31.8
PGSC0003DMG400026881 Solanum tuberosum HOM05D009853 ORTHO05D009969 9.2e-09 64.3 141 32.6
Cpa.g.sc192.10 Carica papaya HOM05D006887 ORTHO05D004325 1.6e-08 63.5 127 34.6
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.6e-08 63.5 49 55.1
Sabra08G0013600 Salix brachista HOM05D015295 ORTHO05D009969 1.6e-08 63.5 126 34.9
Aqoxy5G00368 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 2.0e-08 63.2 135 31.1
CSS0012311 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.0e-08 63.2 140 28.6
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 2.0e-08 63.2 52 53.8
CAN.G798.34 Capsicum annuum HOM05D009853 ORTHO05D009969 2.7e-08 62.8 74 41.9
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.7e-08 62.8 136 31.6
DCAR_031306 Daucus carota HOM05D000307 ORTHO05D000166 3.5e-08 62.4 148 32.4
Potri.010G238900 Populus trichocarpa HOM05D015295 ORTHO05D009969 3.5e-08 62.4 138 34.1
PGSC0003DMG400026582 Solanum tuberosum HOM05D009853 ORTHO05D009969 3.5e-08 62.4 134 29.1
CSS0000924 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 4.6e-08 62.0 137 28.5
Sabra10G0187100 Salix brachista HOM05D015295 ORTHO05D009969 4.6e-08 62.0 119 32.8
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.9e-08 61.6 49 57.1
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 5.9e-08 61.6 53 50.9
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 5.9e-08 61.6 135 29.6
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 7.8e-08 61.2 130 31.5
CSS0013985 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.8e-08 61.2 141 29.1
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.8e-08 61.2 48 54.2
Manes.12G002900 Manihot esculenta HOM05D015295 ORTHO05D009969 7.8e-08 61.2 143 32.9
Oeu051266.1 Olea europaea HOM05D011412 ORTHO05D009969 7.8e-08 61.2 125 30.4
Potri.010G181300 Populus trichocarpa HOM05D015295 ORTHO05D050580 7.8e-08 61.2 121 35.5
CSS0028822 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.0e-07 60.8 151 29.1
Nn4g24661 Nelumbo nucifera HOM05D000307 ORTHO05D000166 1.0e-07 60.8 157 32.5
PGSC0003DMG400016838 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.0e-07 60.8 134 30.6
PGSC0003DMG400033092 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.0e-07 60.8 134 29.1
CSS0019303 Camellia sinensis var. sinensis HOM05D009853 ORTHO05D009969 1.3e-07 60.5 79 34.2
Nitab4.5_0029272g0020 Nicotiana tabacum HOM05D009853 ORTHO05D009969 1.3e-07 60.5 134 30.6
Potri.015G077800 Populus trichocarpa HOM05D006887 ORTHO05D009969 1.3e-07 60.5 122 31.1
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 1.3e-07 60.5 49 55.1
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.7e-07 60.1 48 58.3
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 1.7e-07 60.1 50 52.0
CSS0008018 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 1.7e-07 60.1 152 28.3
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.7e-07 60.1 48 54.2
PGSC0003DMG400036234 Solanum tuberosum HOM05D009853 ORTHO05D009969 1.7e-07 60.1 141 30.5
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 2.3e-07 59.7 46 56.5
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 2.3e-07 59.7 146 32.9
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 3.0e-07 59.3 71 45.1
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 3.0e-07 59.3 52 50.0
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 3.0e-07 59.3 52 50.0
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 3.0e-07 59.3 52 50.0
CSS0019629 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.0e-07 59.3 137 28.5
CSS0039249 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 3.0e-07 59.3 125 32.0
Rhsim07G0189200 Rhododendron simsii HOM05D009853 ORTHO05D009969 3.0e-07 59.3 121 30.6
Sopen01g046270 Solanum pennellii HOM05D000600 ORTHO05D000432 3.0e-07 59.3 71 42.3
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.9e-07 58.9 48 56.2
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.9e-07 58.9 48 56.2
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.9e-07 58.9 48 56.2
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 3.9e-07 58.9 76 44.7
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 3.9e-07 58.9 45 55.6
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 3.9e-07 58.9 45 55.6
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 3.9e-07 58.9 45 55.6
CSS0003566 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.9e-07 58.9 136 28.7
Oeu014492.1 Olea europaea HOM05D011412 ORTHO05D009969 3.9e-07 58.9 119 30.3
Rhsim04G0216100 Rhododendron simsii HOM05D011412 ORTHO05D009969 3.9e-07 58.9 111 30.6
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 3.9e-07 58.9 53 50.9
Sopen01g046240 Solanum pennellii HOM05D000600 ORTHO05D000432 3.9e-07 58.9 77 35.1
Sopen06g027600 Solanum pennellii HOM05D009853 ORTHO05D009969 3.9e-07 58.9 144 30.6
PGSC0003DMG400024902 Solanum tuberosum HOM05D009853 ORTHO05D009969 3.9e-07 58.9 149 28.2
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 5.0e-07 58.5 49 55.1
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 5.0e-07 58.5 49 55.1
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.0e-07 58.5 51 52.9
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.0e-07 58.5 64 48.4
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.0e-07 58.5 49 55.1
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 5.0e-07 58.5 52 50.0
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 5.0e-07 58.5 52 48.1
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 5.0e-07 58.5 52 48.1
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 5.0e-07 58.5 45 55.6
CSS0034462 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 5.0e-07 58.5 136 28.7
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 5.0e-07 58.5 43 58.1
Sabra10G0139000 Salix brachista HOM05D001295 ORTHO05D050580 5.0e-07 58.5 128 35.9
PGSC0003DMG400018623 Solanum tuberosum HOM05D013339 ORTHO05D009969 5.0e-07 58.5 132 32.6
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.6e-07 58.2 49 53.1
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.6e-07 58.2 48 56.2
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 6.6e-07 58.2 45 55.6
CSS0020150 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 6.6e-07 58.2 125 31.2
CSS0029498 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 6.6e-07 58.2 150 29.3
QL06p031925 Quercus lobata HOM05D000307 ORTHO05D000166 6.6e-07 58.2 156 29.5
THA.LOC104820442 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.6e-07 58.2 139 34.5
TWI56G0608 Tripterygium wilfordii HOM05D062112 ORTHO05D009969 6.6e-07 58.2 128 32.0
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 8.6e-07 57.8 134 31.3
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 8.6e-07 57.8 48 54.2
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 8.6e-07 57.8 83 41.0
CSS0048320 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 8.6e-07 57.8 148 31.8
Solyc06g071300.1 Solanum lycopersicum HOM05D009853 ORTHO05D009969 8.6e-07 57.8 144 31.2
PGSC0003DMG400016835 Solanum tuberosum HOM05D009853 ORTHO05D009969 8.6e-07 57.8 141 29.1
TPR.G26403 Trifolium pratense HOM05D008089 ORTHO05D000166 8.6e-07 57.8 145 29.0
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 1.1e-06 57.4 42 57.1
FvH4_2g27520 Fragaria vesca HOM05D000307 ORTHO05D000166 1.1e-06 57.4 118 32.2
FAN15G0593 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.1e-06 57.4 118 32.2
FAN24G2406 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.1e-06 57.4 118 32.2
FAN27G3405 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.1e-06 57.4 118 32.2
Solyc01g103870.1 Solanum lycopersicum HOM05D009853 ORTHO05D009969 1.1e-06 57.4 78 35.9
Actinidia09597 Actinidia chinensis HOM05D002537 ORTHO05D002751 1.5e-06 57.0 137 27.7
Lalb_Chr23g0265491 Lupinus albus HOM05D000307 ORTHO05D000166 1.5e-06 57.0 148 28.4
MBI16_g16368_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.5e-06 57.0 140 32.9
RhsimUnG0101700 Rhododendron simsii HOM05D000307 ORTHO05D000166 1.5e-06 57.0 139 28.8
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 1.9e-06 56.6 52 48.1
FAN20G0315 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.9e-06 56.6 117 32.5
Prupe.3G148900 Prunus persica HOM05D000307 ORTHO05D000166 1.9e-06 56.6 143 30.8
CSS0036324 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 2.5e-06 56.2 145 29.7
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.5e-06 56.2 73 42.5
Prupe.2G110900 Prunus persica HOM05D000307 ORTHO05D000166 2.5e-06 56.2 136 30.9
Prupe.7G030200 Prunus persica HOM05D000307 ORTHO05D000166 2.5e-06 56.2 109 30.3
CSS0029060 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 3.3e-06 55.8 150 28.7
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 3.3e-06 55.8 48 52.1
FvH4_2g23771 Fragaria vesca HOM05D041430 ORTHO05D045375 3.3e-06 55.8 108 34.3
MD17G1250500 Malus domestica HOM05D000307 ORTHO05D000166 3.3e-06 55.8 144 31.2
Rhsim08G0027100 Rhododendron simsii HOM05D011412 ORTHO05D009969 3.3e-06 55.8 130 30.0
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 4.3e-06 55.5 127 37.0
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 4.3e-06 55.5 81 40.7
CSS0025868 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 4.3e-06 55.5 130 30.8
TPR.G1441 Trifolium pratense HOM05D000307 ORTHO05D000166 4.3e-06 55.5 148 31.1
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 5.6e-06 55.1 76 42.1
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 5.6e-06 55.1 76 42.1
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 5.6e-06 55.1 61 42.6
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 5.6e-06 55.1 48 54.2
Cpa.g.sc0.43 Carica papaya HOM05D000307 ORTHO05D000166 5.6e-06 55.1 65 40.0
Lj1C1007T16 Lonicera japonica HOM05D000307 ORTHO05D000166 5.6e-06 55.1 143 30.8
Prupe.6G121700 Prunus persica HOM05D020328 ORTHO05D030515 5.6e-06 55.1 128 31.2
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 7.3e-06 54.7 61 42.6
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 7.3e-06 54.7 118 30.5
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 7.3e-06 54.7 118 32.2
CSS0003429 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 7.3e-06 54.7 146 29.5
Haze_14188 Corylus avellana HOM05D000307 ORTHO05D000166 7.3e-06 54.7 145 28.3
DCAR_007526 Daucus carota HOM05D009853 ORTHO05D009969 7.3e-06 54.7 70 32.9
FAN04G1442 Fragaria x ananassa HOM05D016120 ORTHO05D013324 7.3e-06 54.7 133 30.8
MBI09_g18620_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 7.3e-06 54.7 151 29.1
Medtr6g018920 Medicago truncatula HOM05D000307 ORTHO05D000166 7.3e-06 54.7 145 28.3
Peaxi162Scf00011g00124 Petunia axillaris HOM05D000307 ORTHO05D000166 7.3e-06 54.7 152 27.6
ATR0075G005 Amborella trichopoda HOM05D006887 ORTHO05D004325 9.5e-06 54.3 41 56.1
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 9.5e-06 54.3 77 40.3
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 9.5e-06 54.3 77 40.3
CSS0026794 Camellia sinensis var. sinensis HOM05D013339 ORTHO05D009969 9.5e-06 54.3 146 29.5
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 9.5e-06 54.3 46 52.2
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 9.5e-06 54.3 40 60.0
Eucgr.J02348 Eucalyptus grandis HOM05D000307 ORTHO05D000166 9.5e-06 54.3 100 34.0
Nitab4.5_0000948g0200 Nicotiana tabacum HOM05D009853 ORTHO05D009969 9.5e-06 54.3 134 26.9


User provided reference genes

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