Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 2.1e-109 399.1 201 100.0
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 6.1e-101 370.9 192 97.9
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 3.3e-75 285.4 201 68.2
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 9.7e-75 283.9 194 70.6
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 3.7e-74 282.0 197 68.5
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 6.3e-74 281.2 195 69.2
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.4e-73 279.3 198 66.7
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 9.1e-73 277.3 196 68.4
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.2e-72 276.9 197 67.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.0e-72 276.2 189 69.3
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.0e-72 276.2 195 68.7
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 4.5e-72 275.0 201 67.7
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 5.9e-72 274.6 198 67.2
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.0e-71 273.9 198 67.7
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.3e-71 273.5 197 66.0
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 2.9e-71 272.3 195 71.3
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 6.5e-71 271.2 192 66.7
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.5e-71 270.8 189 68.3
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.1e-70 270.4 197 68.0
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.2e-69 266.9 189 67.2
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.6e-69 266.5 199 63.3
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.6e-69 266.5 203 68.0
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 2.7e-69 265.8 195 66.2
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 4.0e-68 261.9 197 66.0
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 2.0e-67 259.6 197 61.9
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 2.6e-67 259.2 198 61.6
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 3.4e-67 258.8 193 67.4
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.7e-67 258.1 196 61.2
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 5.7e-67 258.1 196 63.3
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 7.5e-67 257.7 195 65.1
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 7.5e-67 257.7 196 60.2
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 9.8e-67 257.3 198 61.1
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.3e-66 256.9 197 63.5
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.7e-66 256.5 201 63.2
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 2.8e-66 255.8 245 54.7
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 6.3e-66 254.6 198 64.6
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 6.3e-66 254.6 196 62.8
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.1e-65 253.8 201 60.2
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.4e-65 253.4 201 61.7
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.8e-65 253.1 201 62.2
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 2.4e-65 252.7 193 64.2
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.1e-65 252.3 196 63.3
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 4.1e-65 251.9 200 62.0
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 4.1e-65 251.9 201 61.2
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.0e-64 249.6 191 63.9
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.0e-64 249.6 199 59.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.7e-64 249.2 193 62.2
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.7e-64 249.2 199 60.3
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.5e-64 248.8 196 60.7
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 4.5e-64 248.4 201 60.2
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.3e-63 246.9 191 62.3
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.3e-63 246.9 201 61.7
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 3.8e-63 245.4 199 59.8
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 6.6e-63 244.6 186 60.2
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 6.6e-63 244.6 197 61.4
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 8.6e-63 244.2 201 58.7
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.1e-62 243.8 199 57.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.1e-62 243.8 201 58.7
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.9e-62 243.0 199 60.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 4.2e-62 241.9 198 61.1
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 4.2e-62 241.9 201 58.7
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 4.2e-62 241.9 194 61.3
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 7.2e-62 241.1 199 57.8
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 9.5e-62 240.7 203 59.1
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.2e-61 240.4 201 57.2
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.6e-61 240.0 196 58.7
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 2.1e-61 239.6 200 57.5
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.8e-61 239.2 201 57.2
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 6.1e-61 238.0 196 59.2
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 8.0e-61 237.7 199 55.3
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.4e-60 236.9 199 54.3
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.4e-60 236.9 201 58.7
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 6.8e-60 234.6 147 80.3
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.0e-59 233.0 201 55.2
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.4e-59 232.3 192 55.7
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.3e-58 230.3 201 56.2
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.3e-58 230.3 199 54.8
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.2e-58 229.6 191 57.1
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.8e-58 229.2 196 55.1
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.3e-58 228.0 191 56.5
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.1e-57 227.3 192 56.8
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.4e-57 226.9 191 57.1
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.8e-57 226.5 196 55.1
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.4e-57 226.1 185 56.8
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 3.1e-57 225.7 198 58.1
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 4.1e-57 225.3 191 57.6
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 4.1e-57 225.3 191 56.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 5.4e-57 224.9 188 57.4
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 9.2e-57 224.2 183 61.2
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.2e-56 223.8 197 52.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.7e-56 222.6 197 52.3
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 5.9e-56 221.5 193 58.0
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 7.8e-56 221.1 197 55.3
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.0e-55 220.7 196 53.6
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-55 219.9 196 54.1
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.1e-54 217.2 189 53.4
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.9e-54 216.5 195 54.4
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.5e-54 216.1 198 53.5
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.6e-54 214.9 195 53.8
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.2e-53 213.8 174 56.9
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-53 213.4 191 55.5
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 54.9
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.6e-53 213.4 187 56.1
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.1e-53 213.0 195 55.4
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.1e-53 213.0 146 67.1
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.8e-53 212.6 187 55.1
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 4.7e-53 211.8 193 52.3
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 6.1e-53 211.5 191 54.5
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.0e-52 210.7 147 66.7
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.4e-52 210.3 195 54.9
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.8e-52 209.9 191 54.5
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 2.3e-52 209.5 186 52.7
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 6.8e-52 208.0 191 52.9
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.8e-52 208.0 191 52.9
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 8.9e-52 207.6 203 52.2
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.0e-51 206.5 191 53.4
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 2.0e-51 206.5 189 55.0
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 2.6e-51 206.1 192 50.5
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 3.4e-51 205.7 191 52.9
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 5.8e-51 204.9 192 50.0
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 5.8e-51 204.9 194 53.1
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.3e-50 203.8 189 52.4
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.2e-50 203.0 189 51.9
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.2e-50 203.0 187 53.5
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 3.7e-50 202.2 191 53.9
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.9e-50 201.8 190 53.7
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 6.4e-50 201.4 199 52.8
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.4e-50 201.4 178 55.1
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 8.3e-50 201.1 192 50.5
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 8.3e-50 201.1 198 52.0
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 8.3e-50 201.1 191 53.4
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.1e-49 200.7 198 50.5
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.4e-49 200.3 192 50.0
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.4e-49 200.3 199 52.8
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.4e-49 200.3 189 48.7
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 7.0e-49 198.0 189 50.3
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 7.8e-48 194.5 169 59.8
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.0e-47 194.1 175 56.0
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 3.3e-46 189.1 191 48.7
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.1e-45 186.4 166 53.0
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.7e-45 185.3 164 53.7
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 4.7e-45 185.3 196 49.0
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 3.1e-44 182.6 165 55.2
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 8.9e-44 181.0 196 49.0
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 2.0e-43 179.9 192 46.4
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.8e-43 177.6 181 50.8
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.3e-42 177.2 191 46.1
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.7e-42 175.6 129 62.0
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.1e-41 174.1 184 48.4
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 3.9e-39 165.6 201 43.8
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.6e-39 164.9 196 43.4
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 8.6e-39 164.5 147 52.4
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 8.6e-39 164.5 196 43.4
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.6e-39 164.5 158 53.8
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.1e-37 159.8 134 55.2
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.8e-36 156.8 126 57.1
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.1e-36 156.0 189 41.3
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 5.2e-36 155.2 195 41.0
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.5e-35 153.7 195 41.0
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 5.8e-35 151.8 196 42.9
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.4e-33 147.1 198 41.4
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.9e-33 146.7 158 51.3
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.8e-28 130.2 114 51.8
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.4e-25 119.8 199 38.2
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 7.8e-24 114.8 108 55.6
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.8e-20 103.6 195 32.3
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 8.4e-18 94.7 185 35.1
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.6e-16 90.5 105 46.7
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 2.7e-16 89.7 196 31.1
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 4.6e-16 89.0 84 53.6
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 3.0e-15 86.3 200 29.0
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.1e-14 84.3 198 28.8
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.3e-14 82.8 166 30.7
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.4e-12 76.6 76 43.4
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.0e-11 73.6 174 31.6
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 5.8e-11 72.0 149 32.2
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.6e-08 62.4 95 38.9
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 7.9e-08 61.6 83 41.0


User provided reference genes

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