Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 0.0e+00 1233.8 643 100.0
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 0.0e+00 1118.2 643 90.8
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 1.6e-275 952.6 652 76.4
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 5.2e-239 831.2 721 66.3
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 6.9e-231 804.3 651 68.8
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 1.3e-224 783.5 523 78.4
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 6.2e-224 781.2 651 66.8
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 9.0e-223 777.3 649 65.2
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 3.4e-222 775.4 657 66.4
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 3.4e-222 775.4 523 77.6
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 8.4e-221 770.8 645 67.4
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 8.4e-221 770.8 657 65.1
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.1e-220 770.4 523 77.1
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 4.2e-220 768.5 652 66.7
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 7.9e-219 764.2 652 66.4
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 1.1e-217 760.4 677 63.5
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 1.9e-217 759.6 655 67.5
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 2.5e-217 759.2 652 65.3
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 3.3e-217 758.8 671 63.5
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 4.8e-216 755.0 650 66.8
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 6.2e-216 754.6 657 64.1
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.4e-215 752.7 650 64.2
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 1.5e-214 750.0 523 75.1
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.9e-213 745.7 652 65.0
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 4.9e-213 745.0 652 64.6
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 3.2e-212 742.3 651 63.9
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.2e-212 741.9 653 65.7
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 2.7e-211 739.2 661 63.1
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.3e-210 736.9 649 64.3
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 3.0e-210 735.7 652 64.1
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 1.5e-209 733.4 657 64.1
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 5.7e-209 731.5 659 63.0
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 5.7e-209 731.5 654 64.5
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 9.6e-209 730.7 653 64.5
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.3e-208 730.3 652 63.7
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.4e-207 726.1 650 64.2
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.0e-206 723.0 658 64.0
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 1.7e-205 719.9 505 74.3
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 3.8e-205 718.8 655 64.0
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.4e-204 716.8 502 74.1
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.2e-204 715.3 679 61.4
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 9.3e-204 714.1 636 64.0
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 4.6e-203 711.8 673 62.3
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-201 706.4 653 62.5
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 2.5e-201 706.1 521 70.6
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 1.6e-200 703.4 655 62.3
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 6.9e-199 698.0 648 61.6
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 1.2e-198 697.2 648 63.0
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 7.7e-198 694.5 649 60.9
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 1.0e-197 694.1 447 80.3
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.0e-197 691.8 504 72.2
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 5.0e-197 691.8 653 61.6
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 5.5e-196 688.3 628 63.4
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 7.2e-196 688.0 488 71.5
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 4.1e-191 672.2 402 82.6
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 8.5e-189 664.5 649 61.3
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 2.7e-187 659.4 662 55.9
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 1.8e-186 656.8 396 81.8
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 6.7e-186 654.8 677 56.7
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 2.0e-185 653.3 662 56.9
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 7.4e-185 651.4 667 57.4
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 1.1e-183 647.5 666 56.6
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 4.1e-183 645.6 539 64.9
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 9.1e-183 644.4 653 59.9
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 9.1e-183 644.4 665 58.8
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 3.5e-182 642.5 659 58.0
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 7.2e-180 634.8 657 55.1
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 7.2e-180 634.8 588 62.8
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 6.1e-179 631.7 447 73.6
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 4.0e-178 629.0 589 63.8
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.4e-175 619.8 594 62.6
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 1.3e-173 614.0 634 55.8
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 2.2e-173 613.2 604 60.9
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 3.8e-173 612.5 693 52.8
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 3.2e-172 609.4 414 73.9
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 4.2e-172 609.0 694 53.2
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 3.6e-171 605.9 643 53.0
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 8.0e-171 604.7 655 53.9
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 1.4e-170 604.0 654 55.2
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 7.0e-167 591.7 551 58.6
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 4.5e-166 589.0 476 64.1
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 1.5e-164 583.9 473 66.6
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 2.6e-161 573.2 647 53.5
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 2.8e-160 569.7 651 54.4
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 1.5e-156 557.4 653 50.8
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 1.5e-153 547.4 530 59.1
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 4.4e-153 545.8 364 75.3
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 2.4e-151 540.0 520 58.5
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 4.1e-143 512.7 539 55.3
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 7.0e-143 511.9 639 51.8
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 7.0e-143 511.9 482 58.5
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 2.7e-142 510.0 662 48.8
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 8.6e-141 505.0 617 49.6
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 4.3e-140 502.7 412 64.8
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 8.1e-139 498.4 487 57.5
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 7.8e-134 481.9 441 60.1
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 4.3e-132 476.1 451 54.5
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 7.1e-127 458.8 494 56.1
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 1.5e-124 451.1 285 78.9
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 1.2e-123 448.0 784 40.8
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 3.4e-121 439.9 492 49.0
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 1.9e-116 424.1 616 45.3
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 2.8e-115 420.2 353 63.5
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 1.8e-114 417.5 616 44.0
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 4.2e-111 406.4 447 57.0
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.6e-110 404.4 487 51.5
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 2.8e-107 393.7 578 48.1
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 2.4e-103 380.6 310 66.5
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 2.5e-92 344.0 331 52.9
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 4.1e-90 336.7 483 41.6
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 9.3e-87 325.5 299 60.9
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 9.3e-87 325.5 254 66.9
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 4.6e-86 323.2 654 38.2
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 6.1e-86 322.8 468 46.8
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 3.9e-85 320.1 438 49.5
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 3.9e-85 320.1 192 80.7
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 3.2e-79 300.4 171 84.2
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 5.5e-79 299.7 295 56.9
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 6.9e-74 282.7 161 83.9
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 3.4e-73 280.4 591 38.1
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 1.1e-68 265.4 160 79.4
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 9.7e-68 262.3 358 48.3
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 2.8e-67 260.8 348 44.5
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 1.4e-66 258.5 161 75.2
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 2.2e-64 251.1 188 69.7
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 8.5e-56 222.6 168 64.9
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 2.5e-55 221.1 124 82.3
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 9.4e-55 219.2 344 48.0
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 9.8e-52 209.1 126 78.6
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 1.6e-46 191.8 384 33.3
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 2.3e-45 188.0 183 59.6
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 9.8e-44 182.6 384 33.3
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.8e-43 181.0 140 69.3
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 3.1e-42 177.6 165 62.4
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.2e-41 175.6 126 68.3
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 9.5e-39 166.0 119 73.9
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.2e-38 165.6 130 70.0
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 1.8e-37 161.8 320 39.1
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 3.2e-34 151.0 136 60.3
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 3.5e-33 147.5 239 37.7
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 3.5e-33 147.5 239 37.7
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 3.3e-31 141.0 87 80.5
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 8.9e-29 132.9 505 23.2
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 2.2e-27 128.3 125 57.6
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 9.2e-26 122.9 69 81.2
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 7.8e-25 119.8 92 66.3
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 3.6e-22 110.9 277 34.7
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 3.6e-22 110.9 69 71.0
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 6.2e-22 110.2 92 63.0
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 6.2e-22 110.2 92 63.0
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 6.2e-22 110.2 92 63.0
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 6.2e-22 110.2 92 63.0
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 8.9e-21 106.3 84 66.7
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.2e-20 105.9 86 64.0
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 1.5e-20 105.5 90 66.7
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 2.2e-19 101.7 176 40.9
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.9e-18 98.6 82 64.6
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.3e-16 91.7 54 79.6
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 3.3e-15 87.8 214 31.8
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.3e-15 87.4 149 47.7
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 1.6e-14 85.5 74 60.8
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.4e-13 82.4 91 50.5
CSS0003774 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 4.4e-12 77.4 242 35.1
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 5.8e-12 77.0 147 37.4
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.9e-11 74.7 51 80.4
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 5.4e-10 70.5 53 69.8
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 9.2e-10 69.7 40 85.0
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 1.6e-09 68.9 46 58.7
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 1.6e-09 68.9 46 58.7
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 2.7e-09 68.2 81 45.7
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 4.6e-09 67.4 46 56.5
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 7.8e-09 66.6 52 67.3
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 1.0e-08 66.2 48 66.7
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 5.1e-08 63.9 39 71.8


User provided reference genes

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