Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 0.0e+00 1180.2 682 100.0
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 8.2e-299 1030.0 735 83.7
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 9.0e-189 664.5 711 63.6
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 3.9e-184 649.0 743 59.1
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 3.4e-143 513.1 735 52.2
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.0e-140 503.8 722 48.3
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 2.9e-139 500.0 798 47.7
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 1.0e-136 491.5 716 51.0
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 1.7e-134 484.2 703 52.2
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 8.3e-134 481.9 746 50.5
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 2.0e-132 477.2 724 50.8
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 1.5e-127 461.1 723 47.6
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 6.3e-126 455.7 795 43.6
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 5.0e-123 446.0 728 49.2
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 6.6e-123 445.7 752 43.6
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 9.8e-119 431.8 790 45.4
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 7.0e-117 425.6 620 52.3
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 2.7e-116 423.7 786 43.5
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.0e-115 421.8 754 47.5
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.0e-115 421.8 754 47.5
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 1.0e-115 421.8 500 52.6
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.4e-112 411.4 711 48.7
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 2.0e-111 407.5 710 48.6
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.6e-111 407.1 804 38.9
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 1.3e-110 404.8 459 52.9
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.7e-110 404.4 716 47.1
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 3.7e-110 403.3 754 43.5
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 4.9e-110 402.9 737 48.0
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.9e-110 402.9 776 44.6
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.1e-109 401.7 746 46.2
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 9.2e-109 398.7 649 48.5
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.2e-108 398.3 768 45.4
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.7e-108 397.1 709 47.1
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.3e-106 389.0 777 44.0
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.8e-105 387.1 768 43.8
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 3.7e-102 376.7 798 46.0
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.7e-99 367.9 515 47.6
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.6e-97 361.3 752 44.9
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 2.8e-97 360.5 721 44.0
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.4e-96 358.2 504 45.8
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 3.1e-96 357.1 433 51.0
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 4.0e-96 356.7 782 44.1
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 7.6e-95 352.4 752 44.7
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 4.2e-93 346.7 746 41.6
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 4.6e-92 343.2 442 49.3
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 2.3e-91 340.9 605 46.8
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 2.3e-91 340.9 455 47.5
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.5e-90 337.4 509 45.0
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 9.6e-90 335.5 741 39.8
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 1.3e-89 335.1 537 45.6
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 1.6e-89 334.7 446 48.2
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.8e-89 333.2 714 37.1
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 8.1e-89 332.4 451 47.0
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 9.0e-88 328.9 465 45.8
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.6e-87 327.4 712 37.1
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 3.4e-87 327.0 459 48.6
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 7.6e-87 325.9 447 47.7
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 2.2e-86 324.3 747 41.9
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.9e-86 323.9 687 42.1
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 6.4e-86 322.8 748 42.4
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.4e-85 321.6 434 47.2
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 1.3e-83 315.1 463 45.6
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 8.7e-83 312.4 841 38.8
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 7.3e-82 309.3 502 43.8
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 6.2e-81 306.2 443 44.9
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 6.2e-81 306.2 630 38.4
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 1.4e-80 305.1 439 46.0
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.8e-80 304.7 448 47.5
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 4.0e-80 303.5 693 41.8
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 3.4e-79 300.4 461 43.8
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 3.4e-79 300.4 762 36.5
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 9.9e-79 298.9 440 45.2
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.7e-78 298.1 379 50.7
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 6.4e-78 296.2 499 43.5
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 8.4e-78 295.8 452 44.2
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 1.9e-77 294.7 784 40.9
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.4e-77 294.3 725 38.5
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 4.2e-77 293.5 411 48.7
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 9.3e-77 292.4 456 46.5
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 9.3e-77 292.4 729 37.9
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 2.7e-76 290.8 436 44.7
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 3.9e-75 287.0 467 45.0
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 2.1e-73 281.2 491 49.7
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 6.2e-73 279.6 794 36.9
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 1.4e-72 278.5 590 44.1
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 1.5e-71 275.0 437 45.3
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 2.0e-71 274.6 558 38.0
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 2.6e-71 274.2 436 44.5
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 2.2e-70 271.2 427 48.2
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 4.9e-70 270.0 425 48.7
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 8.4e-70 269.2 319 52.4
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.1e-69 268.9 492 43.7
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 1.9e-69 268.1 426 48.8
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 5.5e-69 266.5 823 36.6
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 5.5e-69 266.5 430 46.7
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 9.3e-69 265.8 376 46.3
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.6e-68 265.0 389 48.1
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.3e-67 261.9 400 49.5
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.3e-67 261.9 484 41.5
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 3.0e-67 260.8 280 55.7
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 9.6e-66 255.8 663 39.7
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.6e-65 255.0 357 52.7
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 2.1e-65 254.6 513 47.0
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 4.8e-65 253.4 642 36.0
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 4.8e-65 253.4 425 47.5
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 2.4e-64 251.1 412 42.5
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.0e-63 248.1 473 39.7
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.0e-63 248.1 783 32.2
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.7e-62 245.0 414 42.3
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 2.2e-62 244.6 613 42.4
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 2.2e-62 244.6 685 38.5
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 2.2e-62 244.6 613 42.4
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 3.8e-62 243.8 426 41.1
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 5.5e-61 240.0 473 37.8
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 6.7e-59 233.0 474 37.8
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 4.3e-58 230.3 214 58.4
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.1e-56 225.7 347 46.1
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 1.1e-56 225.7 446 40.1
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 4.1e-56 223.8 170 66.5
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 5.3e-56 223.4 337 44.5
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 5.3e-56 223.4 227 53.7
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 6.9e-56 223.0 211 57.8
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 9.0e-56 222.6 376 41.2
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 1.0e-54 219.2 348 42.2
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 1.0e-54 219.2 360 41.9
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 1.3e-54 218.8 207 59.4
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 3.2e-53 214.2 239 50.6
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 5.5e-53 213.4 480 37.1
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.6e-52 210.7 144 72.9
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.3e-51 208.0 220 48.6
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 7.4e-50 203.0 363 39.1
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 4.7e-44 183.7 213 51.6
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 7.4e-42 176.4 192 49.5
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 2.2e-41 174.9 195 49.2
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 5.0e-38 163.7 149 55.7
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 5.0e-38 163.7 136 55.1
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 4.7e-36 157.1 138 55.1
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 2.0e-34 151.8 201 44.3
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 9.7e-34 149.4 136 55.1
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.2e-31 142.5 284 36.3
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 3.2e-29 134.4 92 72.8
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 3.6e-28 131.0 128 64.8
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 6.3e-25 120.2 316 34.5
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 2.2e-22 111.7 86 67.4
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 2.2e-17 95.1 109 48.6
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 3.5e-15 87.8 71 60.6
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 2.8e-12 78.2 137 33.6
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 1.4e-11 75.9 170 31.2
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 4.9e-09 67.4 100 40.0
Hma1.2p1_1100F.1_g257070 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 3.2e-08 64.7 187 33.7
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.7e-07 61.6 88 39.8
Dinv01388 Davidia involucrata HOM05D033017 ORTHO05D005266 1.7e-06 58.9 174 34.5


User provided reference genes

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