Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 5.9e-148 527.7 304 100.0
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 1.4e-144 516.5 304 96.4
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 1.8e-144 516.2 304 97.7
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 4.5e-132 474.9 304 81.6
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 3.8e-131 471.9 303 81.8
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 2.3e-128 462.6 299 81.3
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 3.0e-128 462.2 299 81.9
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 3.9e-128 461.8 299 80.6
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 3.9e-128 461.8 299 81.3
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 6.7e-128 461.1 304 88.8
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 4.8e-126 454.9 302 81.1
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 8.2e-126 454.1 304 78.6
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.4e-125 453.4 290 82.1
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 5.3e-125 451.4 300 77.0
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 5.3e-125 451.4 300 77.0
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 7.0e-125 451.1 302 79.8
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 1.2e-124 450.3 304 78.0
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.6e-124 449.9 304 75.0
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 2.6e-124 449.1 299 87.3
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 2.6e-124 449.1 302 77.2
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 3.5e-124 448.7 295 87.1
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 7.7e-124 447.6 303 78.5
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.0e-123 447.2 299 77.6
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 1.0e-123 447.2 302 76.8
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.7e-123 446.4 302 77.2
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 2.2e-123 446.0 299 78.9
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 2.9e-123 445.7 305 77.4
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 5.0e-123 444.9 299 78.3
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 6.5e-123 444.5 303 78.2
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 1.1e-122 443.7 302 76.2
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.5e-122 443.4 298 76.8
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 1.9e-122 443.0 296 87.5
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.5e-122 442.6 299 77.6
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 2.5e-122 442.6 304 76.0
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 2.5e-122 442.6 305 77.0
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 3.2e-122 442.2 304 76.0
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 4.2e-122 441.8 304 78.3
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 4.2e-122 441.8 307 76.9
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 7.2e-122 441.0 302 85.4
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 9.4e-122 440.7 299 76.9
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 1.6e-121 439.9 302 75.8
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 1.6e-121 439.9 296 86.8
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 8.0e-121 437.6 304 75.3
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.0e-120 437.2 296 78.4
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.8e-120 436.4 305 77.0
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 4.0e-120 435.3 303 76.9
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 5.2e-120 434.9 296 86.5
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 6.8e-120 434.5 296 86.5
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 6.8e-120 434.5 298 75.8
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 6.8e-120 434.5 304 75.0
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 1.5e-119 433.3 304 83.2
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 1.5e-119 433.3 296 86.1
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.5e-119 433.3 296 78.4
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 2.0e-119 433.0 295 76.9
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 5.7e-119 431.4 299 86.3
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 9.7e-119 430.6 305 76.1
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.3e-118 430.3 295 85.4
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.8e-118 429.1 296 86.1
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 4.8e-118 428.3 298 74.5
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 1.4e-117 426.8 299 74.9
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 1.8e-117 426.4 273 91.2
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 1.8e-117 426.4 295 85.8
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 1.8e-117 426.4 299 77.6
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 9.1e-117 424.1 304 75.7
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.6e-116 423.3 304 75.0
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 1.6e-116 423.3 302 75.8
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 2.0e-116 422.9 299 82.9
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 2.0e-116 422.9 304 76.3
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 2.0e-116 422.9 297 76.1
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 3.5e-116 422.2 316 71.2
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 4.5e-116 421.8 299 73.6
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.0e-115 420.6 299 73.6
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 1.3e-115 420.2 302 72.5
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 2.9e-115 419.1 298 83.9
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 5.0e-115 418.3 298 75.2
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 8.5e-115 417.5 299 72.9
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 8.5e-115 417.5 298 83.6
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 1.9e-114 416.4 294 76.5
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.9e-114 416.4 293 84.0
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 2.5e-114 416.0 298 73.2
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.5e-114 416.0 303 74.3
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 7.2e-114 414.5 298 72.1
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 1.2e-113 413.7 299 71.6
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 1.2e-113 413.7 298 77.5
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 1.6e-113 413.3 299 72.6
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.6e-113 413.3 288 84.4
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 3.6e-113 412.1 301 74.4
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 2.3e-112 409.5 302 71.2
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 5.2e-112 408.3 300 71.3
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 8.8e-112 407.5 299 71.6
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 8.8e-112 407.5 299 71.6
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 1.2e-111 407.1 300 72.0
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 1.5e-111 406.8 299 74.6
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 2.0e-111 406.4 299 71.2
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 7.5e-111 404.4 300 72.0
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 7.5e-111 404.4 300 72.0
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 9.8e-111 404.1 300 72.0
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 1.3e-110 403.7 299 71.2
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 1.3e-110 403.7 300 70.3
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 4.8e-110 401.7 297 78.8
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.1e-109 400.6 300 68.3
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 5.4e-109 398.3 297 71.7
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.0e-107 394.0 296 81.4
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 1.5e-106 390.2 295 70.2
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 1.6e-105 386.7 297 68.7
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.1e-105 386.3 299 72.2
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 8.0e-105 384.4 298 80.5
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 2.6e-103 379.4 242 83.1
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 9.8e-103 377.5 269 75.1
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 5.2e-96 355.1 267 68.2
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 4.4e-95 352.1 277 66.8
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 2.4e-93 346.3 287 64.8
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 1.2e-92 344.0 298 60.4
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 2.7e-92 342.8 300 64.0
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 7.8e-92 341.3 263 68.8
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 1.0e-91 340.9 260 69.2
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 8.0e-89 331.3 273 63.7
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 5.2e-88 328.6 304 62.2
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 2.6e-87 326.2 277 74.0
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 2.5e-82 309.7 248 67.3
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 3.0e-75 286.2 252 57.9
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 4.4e-71 272.3 252 55.6
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 2.1e-68 263.5 177 81.4
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 3.6e-65 252.7 149 87.2
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 2.2e-62 243.4 249 52.6
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 2.5e-58 229.9 277 53.1
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 3.2e-53 213.0 146 75.3
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 1.8e-51 207.2 170 62.9
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 3.8e-46 189.5 103 96.1
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 1.2e-36 157.9 103 80.6
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 1.2e-36 157.9 103 80.6
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 6.1e-36 155.6 105 71.4
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 1.4e-29 134.4 118 56.8
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-21 108.2 63 87.3
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 7.2e-13 79.0 43 83.7
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 1.7e-09 67.8 211 24.2
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.3e-06 58.2 172 32.0


User provided reference genes

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