Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014371 Carpinus fangiana HOM05D005981 ORTHO05D007551 7.2e-89 330.5 159 100.0
CiPaw.16G062400 Carya illinoinensis HOM05D005981 ORTHO05D007551 3.2e-52 208.8 116 87.1
QL02p034064 Quercus lobata HOM05D005981 ORTHO05D007551 3.9e-50 201.8 115 87.0
RcHm_v2.0_Chr6g0272141 Rosa chinensis HOM05D005981 ORTHO05D007551 4.0e-47 191.8 146 65.8
FAN20G1782 Fragaria x ananassa HOM05D005981 ORTHO05D007551 2.0e-46 189.5 116 78.4
GSVIVG01034499001 Vitis vinifera HOM05D005981 ORTHO05D007551 2.0e-46 189.5 114 80.7
FvH4_2g12160 Fragaria vesca HOM05D005981 ORTHO05D007551 2.6e-46 189.1 116 78.4
FAN24G2303 Fragaria x ananassa HOM05D005981 ORTHO05D007551 2.6e-46 189.1 116 78.4
Actinidia23324 Actinidia chinensis HOM05D005981 ORTHO05D007551 5.8e-46 188.0 114 80.7
Potri.013G114400 Populus trichocarpa HOM05D005981 ORTHO05D007551 9.8e-46 187.2 116 78.4
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 2.2e-45 186.0 116 78.4
Gohir.A05G274500 Gossypium hirsutum HOM05D005981 ORTHO05D007551 2.9e-45 185.7 115 77.4
Gohir.D05G276700 Gossypium hirsutum HOM05D005981 ORTHO05D007551 2.9e-45 185.7 115 77.4
Ciclev10001512m.g Citrus clementina HOM05D005981 ORTHO05D007551 4.9e-45 184.9 124 76.6
MD10G1046800 Malus domestica HOM05D005981 ORTHO05D007551 8.3e-45 184.1 114 77.2
FAN27G0258 Fragaria x ananassa HOM05D005981 ORTHO05D007551 5.4e-44 181.4 116 76.7
Prupe.8G055700 Prunus persica HOM05D005981 ORTHO05D007551 5.4e-44 181.4 113 75.2
Thecc.08G202800 Theobroma cacao HOM05D005981 ORTHO05D007551 5.4e-44 181.4 121 75.2
Atru.chr13.1806 Acer truncatum HOM05D005981 ORTHO05D007551 1.6e-43 179.9 124 72.6
Atru.chr13.1816 Acer truncatum HOM05D005981 ORTHO05D007551 1.6e-43 179.9 124 72.6
Manes.18G100000 Manihot esculenta HOM05D005981 ORTHO05D007551 2.0e-43 179.5 107 82.2
TWI60G0628 Tripterygium wilfordii HOM05D005981 ORTHO05D007551 1.0e-42 177.2 123 69.9
Lalb_Chr03g0035881 Lupinus albus HOM05D005981 ORTHO05D007551 2.3e-42 176.0 113 75.2
MD05G1040800 Malus domestica HOM05D005981 ORTHO05D007551 2.3e-42 176.0 108 77.8
PSO017G5512 Papaver somniferum HOM05D005981 ORTHO05D007551 2.3e-42 176.0 110 77.3
CANSAT56G4197 Cannabis sativa HOM05D005981 ORTHO05D007551 3.9e-42 175.3 115 73.9
CSS0002602 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 5.0e-42 174.9 107 81.3
Lj2g0016315 Lotus japonicus HOM05D005981 ORTHO05D007551 7.3e-41 171.0 113 74.3
Medtr6g033525 Medicago truncatula HOM05D005981 ORTHO05D007551 1.6e-40 169.9 108 76.9
Phvul.004G084494 Phaseolus vulgaris HOM05D005981 ORTHO05D007551 3.6e-40 168.7 113 70.8
MELO3C008115.2 Cucumis melo HOM05D005981 ORTHO05D007551 6.2e-40 167.9 101 81.2
CsaV3_2G033430 Cucumis sativus L. HOM05D005981 ORTHO05D007551 6.2e-40 167.9 101 81.2
vmacro12496 Vaccinium macrocarpon HOM05D005981 ORTHO05D007551 1.4e-39 166.8 110 74.5
ClCG11G008230 Citrullus lanatus HOM05D005981 ORTHO05D007551 1.8e-39 166.4 101 80.2
MBI17_g15293_MAGBIO Magnolia biondii HOM05D005981 ORTHO05D007551 2.3e-39 166.0 112 70.5
PGR119G0141 Punica granatum HOM05D005981 ORTHO05D007551 3.1e-39 165.6 115 69.6
BraA09t38748Z Brassica rapa HOM05D005981 ORTHO05D007551 6.8e-39 164.5 105 75.2
CAN.G61.32 Capsicum annuum HOM05D005981 ORTHO05D007551 6.8e-39 164.5 123 64.2
Psat1g098600 Pisum sativum HOM05D005981 ORTHO05D007551 6.8e-39 164.5 114 71.9
Nitab4.5_0000159g0230 Nicotiana tabacum HOM05D005981 ORTHO05D007551 8.9e-39 164.1 114 69.3
Solyc11g017230.2 Solanum lycopersicum HOM05D005981 ORTHO05D007551 8.9e-39 164.1 111 70.3
Sopen11g009130 Solanum pennellii HOM05D005981 ORTHO05D007551 8.9e-39 164.1 111 70.3
VMungo0464G1554 Vigna mungo HOM05D005981 ORTHO05D007551 1.2e-38 163.7 113 67.3
arahy.Tifrunner.gnm1.ann1.SEU8EV Arachis hypogaea HOM05D005981 ORTHO05D007551 1.5e-38 163.3 106 74.5
arahy.Tifrunner.gnm1.ann1.VB64T6 Arachis hypogaea HOM05D005981 ORTHO05D007551 1.5e-38 163.3 106 74.5
Carub.0001s3253 Capsella rubella HOM05D005981 ORTHO05D007551 2.0e-38 162.9 106 73.6
TPR.G36660 Trifolium pratense HOM05D005981 ORTHO05D007551 2.0e-38 162.9 115 70.4
BcaB07g33127 Brassica carinata HOM05D005981 ORTHO05D007551 2.6e-38 162.5 105 74.3
Sed0004103 Sechium edule HOM05D005981 ORTHO05D007551 2.6e-38 162.5 107 75.7
Ca_14000_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 3.4e-38 162.2 114 71.1
Rhsim04G0161600 Rhododendron simsii HOM05D005981 ORTHO05D007551 3.4e-38 162.2 111 72.1
Rhsim06G0097100 Rhododendron simsii HOM05D005981 ORTHO05D007551 3.4e-38 162.2 111 72.1
Sp1g29600 Schrenkiella parvula HOM05D005981 ORTHO05D007551 3.4e-38 162.2 105 74.3
A09p32090 Brassica napus HOM05D005981 ORTHO05D007551 5.8e-38 161.4 105 73.3
Peaxi162Scf00495g00015 Petunia axillaris HOM05D005981 ORTHO05D007551 5.8e-38 161.4 124 62.9
C06p11540 Brassica napus HOM05D005981 ORTHO05D007551 7.5e-38 161.0 105 73.3
BolC6t36287H Brassica oleracea HOM05D005981 ORTHO05D007551 7.5e-38 161.0 105 73.3
MBI17_g01761_MAGBIO Magnolia biondii HOM05D005981 ORTHO05D007551 1.3e-37 160.2 112 68.8
THA.LOC104806782 Tarenaya hassleriana HOM05D005981 ORTHO05D007551 1.3e-37 160.2 102 73.5
BcaC08g43776 Brassica carinata HOM05D005981 ORTHO05D007551 1.7e-37 159.8 105 73.3
Thhalv10008072m.g Eutrema salsugineum HOM05D005981 ORTHO05D007551 2.2e-37 159.5 105 72.4
Oeu021010.1 Olea europaea HOM05D005981 ORTHO05D007551 2.2e-37 159.5 114 67.5
CARHR033840 Cardamine hirsuta HOM05D005981 ORTHO05D007551 2.9e-37 159.1 105 72.4
Migut.C01243 Erythranthe guttata HOM05D005981 ORTHO05D007551 2.9e-37 159.1 114 65.8
Hund27079 Selenicereus undatus HOM05D005981 ORTHO05D007551 6.4e-37 157.9 107 71.0
Aa31LG6G8450 Aethionema arabicum HOM05D005981 ORTHO05D007551 8.3e-37 157.5 105 69.5
AL1G48940 Arabidopsis lyrata HOM05D005981 ORTHO05D007551 8.3e-37 157.5 105 71.4
AT1G34380 Arabidopsis thaliana HOM05D005981 ORTHO05D007551 1.1e-36 157.1 105 71.4
Aqoxy5G02601 Aquilegia oxysepala HOM05D005981 ORTHO05D007551 1.9e-36 156.4 114 66.7
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 2.4e-36 156.0 108 66.7
DCAR_023098 Daucus carota HOM05D005981 ORTHO05D007551 3.2e-36 155.6 117 65.0
Cc00_g04830 Coffea canephora HOM05D005981 ORTHO05D007551 4.1e-36 155.2 108 69.4
Eucgr.F04135 Eucalyptus grandis HOM05D005981 ORTHO05D007551 4.1e-36 155.2 107 72.0
AUR62023576 Chenopodium quinoa HOM05D005981 ORTHO05D007551 1.2e-35 153.7 105 72.4
SGA_v2.0_scaffold118G32466 Striga asiatica HOM05D005981 ORTHO05D007551 1.2e-35 153.7 114 63.2
HPP92_000088 Vanilla planifolia HOM05D005981 ORTHO05D007551 2.1e-35 152.9 107 72.0
MSTRG.1517 Avicennia marina HOM05D005981 ORTHO05D007551 3.5e-35 152.1 113 65.5
AUR62004659 Chenopodium quinoa HOM05D005981 ORTHO05D007551 4.6e-35 151.8 105 71.4
EL10Ac1g00070 Beta vulgaris HOM05D005981 ORTHO05D007551 1.0e-34 150.6 106 67.9
HanXRQChr04g0107411 Helianthus annuus HOM05D005981 ORTHO05D007551 1.7e-34 149.8 119 61.3
Lsat_1_v5_gn_1_10481 Lactuca sativa HOM05D005981 ORTHO05D007551 5.1e-34 148.3 115 62.6
Dinv41689 Davidia involucrata HOM05D005981 ORTHO05D007551 6.6e-34 147.9 108 68.5
CSS0046436 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 4.7e-32 141.7 81 85.2
unitig_747.g21468 Utricularia gibba HOM05D005981 ORTHO05D007551 2.9e-29 132.5 123 52.8
Duzib177G0330 Durio zibethinus HOM05D005981 ORTHO05D007551 8.4e-29 131.0 75 84.0
Sc23g0001130 Simmondsia chinensis HOM05D005981 ORTHO05D007551 1.1e-28 130.6 75 84.0
Nitab4.5_0006099g0030 Nicotiana tabacum HOM05D005981 ORTHO05D007551 1.4e-28 130.2 75 82.7
SEGI_14270 Sequoiadendron giganteum HOM05D005981 ORTHO05D007551 1.4e-28 130.2 118 54.2
Ah.05g177990 Amaranthus hybridus HOM05D005981 ORTHO05D001449 1.9e-28 129.8 84 75.0
ATR1134G043 Amborella trichopoda HOM05D005981 ORTHO05D007551 4.1e-28 128.6 75 81.3
Gorai.009G289700 Gossypium raimondii HOM05D005981 ORTHO05D007551 5.4e-28 128.3 74 83.8
PGR102G3248 Punica granatum HOM05D005981 ORTHO05D007551 5.4e-28 128.3 90 70.0
COL.COLO4_36657 Corchorus olitorius HOM05D005981 ORTHO05D007551 1.2e-27 127.1 72 86.1
PGSC0003DMG400009236 Solanum tuberosum HOM05D005981 ORTHO05D007551 1.7e-26 123.2 73 80.8
Os01g0874800 Oryza sativa ssp. japonica HOM05D005981 ORTHO05D007551 5.1e-26 121.7 75 74.7
CDE06G1238 Ceratophyllum demersum HOM05D005981 ORTHO05D007551 6.6e-26 121.3 69 81.2
Lj7A293G47 Lonicera japonica HOM05D005981 ORTHO05D007551 1.1e-25 120.6 75 76.0
Zm00001eb146190 Zea mays HOM05D005981 ORTHO05D007551 1.9e-25 119.8 83 68.7
Mapoly0035s0044 Marchantia polymorpha HOM05D005981 ORTHO05D007551 4.3e-25 118.6 90 65.6
Pp3c1_23520 Physcomitrium patens HOM05D005981 ORTHO05D007551 6.2e-24 114.8 107 57.9
SMO174G0158 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 1.4e-23 113.6 142 45.8
SMO271G0041 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 3.1e-23 112.5 134 47.0
HPP92_000081 Vanilla planifolia HOM05D005981 ORTHO05D007551 4.0e-23 112.1 70 80.0
SMO308G0008 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 3.4e-22 109.0 98 55.1
Glyma.16G156300 Glycine max HOM05D005981 ORTHO05D007551 6.4e-21 104.8 113 50.4
Glyma.02G074400 Glycine max HOM05D005981 ORTHO05D007551 9.3e-20 100.9 64 73.4
AagrBONN_evm.TU.Sc2ySwM_344.1289 Anthoceros agrestis HOM05D005981 ORTHO05D007551 4.6e-19 98.6 85 56.5
SMO308G0023 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 1.0e-18 97.4 84 56.0
SMO308G0062 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 1.0e-18 97.4 84 56.0
CBR_g56098 Chara braunii HOM05D005981 ORTHO05D007551 2.3e-18 96.3 124 40.3
SMO271G0001 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 1.8e-15 86.7 98 49.0
MSTRG.1511 Avicennia marina HOM05D005981 ORTHO05D007551 4.0e-15 85.5 51 76.5
SMO210G0005 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 3.8e-13 79.0 73 57.5
SMO210G0002 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 2.3e-10 69.7 56 55.4
arahy.Tifrunner.gnm1.ann1.XJI1XC Arachis hypogaea HOM05D005981 ORTHO05D007551 7.3e-09 64.7 37 75.7
Cfa001894 Carpinus fangiana HOM05D000273 ORTHO05D000069 1.1e-07 60.8 28 89.3
Cfa004289 Carpinus fangiana HOM05D000273 ORTHO05D000069 1.1e-07 60.8 28 89.3
Cfa013965 Carpinus fangiana HOM05D000273 ORTHO05D000069 1.1e-07 60.8 28 89.3
Cfa006267 Carpinus fangiana HOM05D000273 ORTHO05D000069 6.9e-07 58.2 28 89.3
Cfa016880 Carpinus fangiana HOM05D000194 ORTHO05D000069 6.9e-07 58.2 28 89.3
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 9.0e-07 57.8 28 82.1
Cfa004210 Carpinus fangiana HOM05D000273 ORTHO05D000069 2.6e-06 56.2 27 85.2
Cfa012215 Carpinus fangiana HOM05D000273 ORTHO05D000069 2.6e-06 56.2 28 85.7
Cfa012493 Carpinus fangiana HOM05D000273 ORTHO05D000069 2.6e-06 56.2 31 77.4
Cfa016016 Carpinus fangiana HOM05D000273 ORTHO05D000198 7.6e-06 54.7 28 85.7
Cfa018494 Carpinus fangiana HOM05D000500 ORTHO05D000367 7.6e-06 54.7 28 82.1
Haze_19925 Corylus avellana HOM05D000194 ORTHO05D000069 9.9e-06 54.3 28 82.1
Zm00001eb366480 Zea mays HOM05D005981 ORTHO05D007551 9.9e-06 54.3 101 33.7


User provided reference genes

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