Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 3.9e-268 927.5 466 100.0
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 2.0e-256 888.6 466 95.5
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 7.4e-219 763.8 459 81.7
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 6.3e-218 760.8 465 80.6
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 1.5e-203 713.0 465 76.8
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 4.7e-197 691.4 466 73.8
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 5.7e-195 684.5 467 72.2
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 4.1e-193 678.3 464 72.2
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 5.9e-192 674.5 464 72.4
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 5.9e-192 674.5 464 72.6
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 5.0e-191 671.4 464 73.3
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 1.1e-190 670.2 464 71.6
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 2.1e-189 666.0 461 70.9
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.0e-188 663.7 461 70.5
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 1.8e-188 662.9 466 69.1
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 3.4e-187 658.7 434 74.2
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 3.4e-187 658.7 463 70.6
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 9.8e-187 657.1 441 72.1
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 9.8e-187 657.1 460 70.7
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 3.2e-185 652.1 431 74.9
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 9.2e-185 650.6 452 71.2
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 2.0e-184 649.4 450 71.8
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 8.6e-183 644.0 473 68.7
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 2.6e-179 632.5 442 70.4
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 2.6e-179 632.5 442 70.6
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 6.4e-178 627.9 464 65.5
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 6.6e-175 617.8 429 70.9
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 2.5e-174 615.9 459 64.7
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 7.3e-174 614.4 467 64.5
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 9.5e-174 614.0 436 67.4
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 9.5e-174 614.0 436 67.7
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 3.6e-173 612.1 434 67.3
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 3.6e-173 612.1 464 65.5
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 3.6e-173 612.1 447 68.5
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 1.1e-172 610.5 464 64.2
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 1.7e-170 603.2 434 67.3
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 1.7e-170 603.2 450 67.6
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 1.7e-170 603.2 467 63.6
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 4.9e-170 601.7 444 66.9
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 1.7e-167 593.2 448 66.5
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 2.4e-164 582.8 449 65.5
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 3.1e-164 582.4 447 63.1
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 6.8e-164 581.3 449 63.7
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 8.9e-164 580.9 454 63.2
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 8.9e-164 580.9 464 62.9
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 2.0e-163 579.7 462 63.0
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 3.4e-163 578.9 461 64.4
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 5.8e-163 578.2 443 65.2
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 7.6e-163 577.8 461 63.6
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 1.3e-162 577.0 445 64.9
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 1.1e-161 573.9 464 62.3
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.6e-160 570.1 423 65.5
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 4.6e-160 568.5 469 62.0
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 7.8e-160 567.8 448 63.8
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 1.0e-159 567.4 445 63.6
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 5.1e-159 565.1 461 61.6
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 1.3e-157 560.5 461 62.3
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.2e-157 558.1 461 60.5
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 1.1e-156 557.4 463 62.0
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 1.4e-156 557.0 439 64.0
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 3.1e-156 555.8 450 63.6
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 6.9e-156 554.7 445 63.6
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 9.0e-156 554.3 440 64.3
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 4.4e-155 552.0 418 66.7
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 7.6e-155 551.2 443 63.4
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 9.9e-155 550.8 445 63.4
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 4.9e-154 548.5 463 59.8
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 4.2e-153 545.4 399 68.4
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 7.1e-153 544.7 448 62.3
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.2e-152 543.9 448 63.2
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 7.9e-152 541.2 429 62.7
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 3.0e-151 539.3 449 63.0
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 1.5e-150 537.0 449 63.0
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.3e-149 533.9 449 62.8
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 2.0e-147 526.6 515 55.7
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 9.9e-147 524.2 485 58.8
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.6e-144 516.9 472 58.1
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.5e-142 510.4 443 61.9
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 4.8e-141 505.4 361 69.3
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 7.6e-139 498.0 425 58.1
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.6e-136 490.3 335 71.3
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 5.3e-132 475.3 433 57.0
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 5.3e-132 475.3 442 52.7
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 1.2e-131 474.2 746 39.9
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 7.6e-131 471.5 442 54.3
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 5.5e-129 465.3 318 72.0
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 1.6e-128 463.8 433 53.3
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 3.8e-122 442.6 301 69.8
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 5.7e-118 428.7 377 60.7
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 1.7e-117 427.2 308 67.2
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 1.6e-112 410.6 330 60.6
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 7.9e-112 408.3 444 46.2
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 8.5e-106 388.3 364 52.2
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 4.7e-104 382.5 447 47.7
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 1.0e-103 381.3 311 61.4
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 2.0e-102 377.1 316 61.4
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 1.7e-98 364.0 317 59.3
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 2.9e-98 363.2 396 45.5
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 8.5e-98 361.7 254 72.8
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 1.6e-96 357.5 319 57.4
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.6e-94 350.1 400 49.8
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.8e-93 346.7 400 44.2
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 7.0e-92 342.0 243 70.8
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.8e-87 327.4 352 52.3
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 1.1e-76 291.6 217 65.4
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.2e-75 288.1 216 66.2
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 3.5e-75 286.6 446 39.5
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 8.6e-66 255.4 217 59.0
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 1.1e-65 255.0 174 66.1
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 3.7e-61 240.0 211 61.6
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 2.5e-57 227.3 149 75.8
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 1.1e-44 185.3 135 67.4
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 3.2e-44 183.7 142 66.2
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 3.2e-44 183.7 228 45.6
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 6.6e-42 176.0 137 65.0
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.3e-40 171.8 169 50.9
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 7.9e-35 152.5 132 59.8
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 2.8e-32 144.1 105 64.8
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 2.0e-22 111.3 419 23.2
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 4.5e-22 110.2 105 48.6
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 1.0e-21 109.0 405 25.4
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 1.0e-21 109.0 374 25.7
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.8e-18 98.2 75 62.7
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 3.9e-18 97.1 135 43.7
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 1.8e-15 88.2 79 58.2
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 8.5e-13 79.3 429 24.0
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 2.2e-08 64.7 43 72.1


User provided reference genes

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