Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014237 Carpinus fangiana HOM05D006931 ORTHO05D008782 4.9e-88 328.6 288 100.0
Haze_12642 Corylus avellana HOM05D006931 ORTHO05D008782 5.7e-36 155.6 78 93.6
Cfa014231 Carpinus fangiana HOM05D006931 ORTHO05D008782 2.8e-35 153.3 78 92.3
FAN02G4040 Fragaria x ananassa HOM05D006931 ORTHO05D008782 1.3e-32 144.4 262 59.2
QL04p060976 Quercus lobata HOM05D006931 ORTHO05D008782 1.5e-31 141.0 78 84.6
RcHm_v2.0_Chr2g0156201 Rosa chinensis HOM05D006931 ORTHO05D008782 1.9e-31 140.6 75 84.0
QL04p061072 Quercus lobata HOM05D006931 ORTHO05D008782 3.3e-31 139.8 78 83.3
FvH4_6g40750 Fragaria vesca HOM05D006931 ORTHO05D008782 6.1e-30 135.6 75 81.3
FAN14G4269 Fragaria x ananassa HOM05D006931 ORTHO05D008782 6.1e-30 135.6 75 81.3
Aqoxy4G02238_Aqoxy4G02239 Aquilegia oxysepala HOM05D006931 ORTHO05D008782 1.4e-29 134.4 75 81.3
MD17G1115600 Malus domestica HOM05D006931 ORTHO05D008782 2.3e-29 133.7 75 78.7
CiPaw.03G280700 Carya illinoinensis HOM05D006931 ORTHO05D008782 3.0e-29 133.3 70 90.0
FAN05G5053 Fragaria x ananassa HOM05D006931 ORTHO05D008782 5.2e-29 132.5 75 80.0
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 8.9e-29 131.7 75 80.0
Prupe.3G199000 Prunus persica HOM05D006931 ORTHO05D008782 1.2e-28 131.3 75 78.7
Manes.06G016000 Manihot esculenta HOM05D006931 ORTHO05D008782 1.5e-28 131.0 75 77.3
MBI19_g25580_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 2.0e-28 130.6 75 81.3
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 2.6e-28 130.2 78 74.4
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 3.4e-28 129.8 74 82.4
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 7.5e-28 128.6 78 75.6
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 9.8e-28 128.3 75 77.3
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 9.8e-28 128.3 75 77.3
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 9.8e-28 128.3 75 77.3
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 1.7e-27 127.5 75 76.0
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 3.7e-27 126.3 75 77.3
Cfa014238 Carpinus fangiana HOM05D006931 ORTHO05D008782 4.9e-27 125.9 61 95.1
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 4.9e-27 125.9 78 73.1
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 6.4e-27 125.6 75 74.7
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 8.3e-27 125.2 78 71.8
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 1.1e-26 124.8 78 70.5
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 1.1e-26 124.8 78 70.5
PGR142G3220 Punica granatum HOM05D006931 ORTHO05D008782 1.1e-26 124.8 78 70.5
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 2.4e-26 123.6 75 73.3
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 2.4e-26 123.6 75 73.3
CANSAT64G0807 Cannabis sativa HOM05D006931 ORTHO05D008782 4.1e-26 122.9 74 75.7
CARHR234290 Cardamine hirsuta HOM05D006931 ORTHO05D008782 5.4e-26 122.5 75 74.7
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 7.0e-26 122.1 78 71.8
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 7.0e-26 122.1 78 69.2
Sabra14G0126400 Salix brachista HOM05D006931 ORTHO05D008782 9.2e-26 121.7 75 73.3
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 1.2e-25 121.3 74 68.9
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 1.2e-25 121.3 75 69.3
AT4G26680 Arabidopsis thaliana HOM05D006931 ORTHO05D008782 1.2e-25 121.3 75 74.7
AUR62015178 Chenopodium quinoa HOM05D006931 ORTHO05D008782 1.2e-25 121.3 74 75.7
Carub.0007s1417 Capsella rubella HOM05D006931 ORTHO05D008782 1.6e-25 120.9 75 74.7
Ciclev10018243m.g Citrus clementina HOM05D006931 ORTHO05D008782 2.0e-25 120.6 78 67.9
Cpa.g.sc211.20 Carica papaya HOM05D006931 ORTHO05D008782 2.7e-25 120.2 75 73.3
AUR62017857 Chenopodium quinoa HOM05D006931 ORTHO05D008782 2.7e-25 120.2 74 75.7
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 2.7e-25 120.2 78 67.9
THA.LOC104808862 Tarenaya hassleriana HOM05D006931 ORTHO05D008782 2.7e-25 120.2 75 73.3
Sp7g24650 Schrenkiella parvula HOM05D006931 ORTHO05D008782 5.9e-25 119.0 75 73.3
Duzib133G1060 Durio zibethinus HOM05D006931 ORTHO05D008782 7.8e-25 118.6 75 70.7
BcaC09g52253 Brassica carinata HOM05D006931 ORTHO05D008782 1.0e-24 118.2 75 72.0
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 1.0e-24 118.2 78 66.7
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 1.0e-24 118.2 78 69.2
Thhalv10024897m.g Eutrema salsugineum HOM05D006931 ORTHO05D008782 1.3e-24 117.9 75 72.0
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 1.3e-24 117.9 75 72.0
Ah.10g034380 Amaranthus hybridus HOM05D006931 ORTHO05D008782 2.3e-24 117.1 75 73.3
EL10Ac6g15337 Beta vulgaris HOM05D006931 ORTHO05D008782 2.3e-24 117.1 75 72.0
AUR62003544 Chenopodium quinoa HOM05D006931 ORTHO05D008782 2.3e-24 117.1 74 74.3
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 2.3e-24 117.1 78 65.4
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 3.0e-24 116.7 75 70.7
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 3.0e-24 116.7 78 69.2
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 3.0e-24 116.7 78 69.2
Hma1.2p1_0253F.1_g103010 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 6.6e-24 115.5 72 70.8
Hma1.2p1_2484F.1_g323040 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 6.6e-24 115.5 72 70.8
Solyc07g047620.3 Solanum lycopersicum HOM05D006931 ORTHO05D008782 8.6e-24 115.2 78 66.7
Sopen07g024110 Solanum pennellii HOM05D006931 ORTHO05D008782 8.6e-24 115.2 78 66.7
PGSC0003DMG400006142 Solanum tuberosum HOM05D006931 ORTHO05D008782 8.6e-24 115.2 75 68.0
Lsat_1_v5_gn_2_33981 Lactuca sativa HOM05D001522 ORTHO05D008782 1.5e-23 114.4 78 65.4
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 2.5e-23 113.6 73 68.5
A01p17940 Brassica napus HOM05D003050 ORTHO05D003513 2.5e-23 113.6 75 69.3
BraA01t01749Z Brassica rapa HOM05D003050 ORTHO05D003513 2.5e-23 113.6 75 68.0
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 2.5e-23 113.6 75 69.3
BcaC09g50628 Brassica carinata HOM05D006931 ORTHO05D008782 3.3e-23 113.2 75 69.3
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 3.3e-23 113.2 75 69.3
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.3e-23 113.2 77 66.2
CAN.G805.1 Capsicum annuum HOM05D006931 ORTHO05D008782 5.6e-23 112.5 78 65.4
Psat4g195880 Pisum sativum HOM05D006931 ORTHO05D008782 5.6e-23 112.5 76 65.8
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 5.6e-23 112.5 78 64.1
HPP92_013549 Vanilla planifolia HOM05D006931 ORTHO05D008782 5.6e-23 112.5 73 68.5
Peaxi162Scf00802g00211 Petunia axillaris HOM05D006931 ORTHO05D008782 9.5e-23 111.7 78 65.4
Peaxi162Scf70695g00002 Petunia axillaris HOM05D006931 ORTHO05D008782 9.5e-23 111.7 78 65.4
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 1.6e-22 110.9 73 61.6
Migut.B01087 Erythranthe guttata HOM05D006931 ORTHO05D008782 1.6e-22 110.9 75 64.0
DCAR_019687 Daucus carota HOM05D006931 ORTHO05D008782 2.1e-22 110.5 78 64.1
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 2.8e-22 110.2 71 66.2
Rhsim01G0200100 Rhododendron simsii HOM05D006931 ORTHO05D008782 2.8e-22 110.2 72 66.7
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 2.8e-22 110.2 75 66.7
Nitab4.5_0001774g0100 Nicotiana tabacum HOM05D006931 ORTHO05D008782 3.6e-22 109.8 78 65.4
Nitab4.5_0001701g0020 Nicotiana tabacum HOM05D006931 ORTHO05D008782 4.7e-22 109.4 72 68.1
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 6.2e-22 109.0 71 66.2
HanXRQChr04g0126531 Helianthus annuus HOM05D006931 ORTHO05D008782 8.0e-22 108.6 71 66.2
TPR.G8749 Trifolium pratense HOM05D006931 ORTHO05D008782 8.0e-22 108.6 78 61.5
SGA_v2.0_scaffold347G49544 Striga asiatica HOM05D006931 ORTHO05D008782 1.0e-21 108.2 75 66.7
AL7G26160 Arabidopsis lyrata HOM05D006931 ORTHO05D008782 1.8e-21 107.5 67 73.1
Sc07g0001940 Simmondsia chinensis HOM05D006931 ORTHO05D008782 3.1e-21 106.7 71 66.2
SalBow1G4479 Salvia bowleyana HOM05D006931 ORTHO05D008782 5.8e-20 102.4 75 58.7
Phvul.010G143400 Phaseolus vulgaris HOM05D006931 ORTHO05D008782 3.7e-19 99.8 75 62.7
VMungo0331G0870 Vigna mungo HOM05D006931 ORTHO05D008782 3.7e-19 99.8 75 61.3
Glyma.08G199100 Glycine max HOM05D006931 ORTHO05D008782 4.9e-19 99.4 78 61.5
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.5e-15 87.0 73 54.8
Atru.chr1.3931 Acer truncatum HOM05D006931 ORTHO05D008782 4.7e-14 82.8 51 70.6
CSS0005617 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 6.2e-14 82.4 54 66.7
Gohir.A07G164200 Gossypium hirsutum HOM05D006931 ORTHO05D008782 1.1e-13 81.6 50 74.0
Oeu052201.2 Olea europaea HOM05D006931 ORTHO05D008782 4.4e-12 76.3 49 69.4
RcHm_v2.0_Chr4g0385181 Rosa chinensis HOM05D006931 ORTHO05D008782 1.4e-10 71.2 38 78.9
Manes.05G013300 Manihot esculenta HOM05D006931 ORTHO05D015207 4.1e-10 69.7 62 53.2
Cfa014232 Carpinus fangiana HOM05D006931 ORTHO05D008782 1.2e-09 68.2 78 50.0
BcaC09g50625 Brassica carinata HOM05D064260 ORTHO05D015207 2.1e-09 67.4 106 40.6
Hma1.2p1_0253F.1_g103030 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.9e-07 60.8 187 54.5
Hma1.2p1_2484F.1_g323045 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 1.9e-07 60.8 187 54.5
QL08p038506 Quercus lobata HOM05D016681 ORTHO05D015207 2.5e-07 60.5 61 52.5
Haze_12656 Corylus avellana HOM05D016681 ORTHO05D015207 5.6e-07 59.3 67 52.2
ATR0829G035 Amborella trichopoda HOM05D007455 ORTHO05D009431 9.5e-07 58.5 78 33.3
Zm00001eb027640 Zea mays HOM05D006931 ORTHO05D008782 9.5e-07 58.5 60 46.7
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.8e-06 57.0 73 37.0
Nn5g29749 Nelumbo nucifera HOM05D007390 ORTHO05D009114 3.6e-06 56.6 73 30.1
QL08p003914 Quercus lobata HOM05D007390 ORTHO05D009114 3.6e-06 56.6 73 32.9
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 4.7e-06 56.2 78 32.1
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 4.7e-06 56.2 78 30.8
Lalb_Chr03g0043751 Lupinus albus HOM05D006931 ORTHO05D008782 8.1e-06 55.5 78 43.6


User provided reference genes

Program Settings