Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 5.6e-242 840.5 415 100.0
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 1.9e-237 825.5 415 97.6
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 5.4e-213 744.2 418 86.1
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 1.7e-211 739.2 412 85.4
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.0e-200 701.4 415 79.8
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 7.6e-199 697.2 415 79.3
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 4.9e-198 694.5 415 80.7
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 1.4e-197 693.0 415 79.5
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.3e-195 686.4 415 80.5
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 1.8e-195 686.0 415 79.3
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 8.7e-195 683.7 415 77.6
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.1e-194 683.3 411 79.8
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 5.7e-194 681.0 415 79.0
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.1e-192 675.2 414 77.3
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.3e-192 674.5 411 78.1
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 9.0e-192 673.7 414 77.1
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.4e-191 671.8 412 75.7
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 6.5e-190 667.5 417 74.8
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.5e-189 665.6 416 75.2
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.4e-184 649.0 415 75.2
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.3e-182 643.3 412 73.5
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 4.6e-180 634.8 411 73.5
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.0e-179 633.6 414 71.5
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 4.7e-172 608.2 411 71.5
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 6.1e-172 607.8 413 71.2
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.4e-171 606.7 415 71.8
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 8.8e-171 604.0 415 68.7
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.2e-169 599.4 415 69.9
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.8e-169 599.0 408 70.3
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 3.1e-168 595.5 409 71.1
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 4.1e-168 595.1 406 71.4
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 2.0e-167 592.8 415 70.8
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 4.5e-167 591.7 382 73.8
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.4e-163 580.1 397 70.3
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.4e-163 580.1 414 69.6
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 4.0e-163 578.6 396 69.7
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 1.1e-162 577.0 412 68.4
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 5.7e-162 574.7 419 67.5
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 3.7e-161 572.0 397 69.0
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 4.8e-161 571.6 397 69.0
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 1.4e-160 570.1 415 65.5
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 1.4e-160 570.1 399 69.4
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 2.2e-158 562.8 417 65.2
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 2.9e-158 562.4 414 64.5
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 6.5e-158 561.2 410 64.9
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 9.4e-157 557.4 410 64.6
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 1.2e-156 557.0 417 65.2
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 1.2e-156 557.0 417 65.2
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 4.7e-156 555.1 414 65.0
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.4e-154 548.5 414 65.2
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.2e-153 546.2 413 65.1
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.2e-153 546.2 413 65.1
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 3.1e-152 542.3 409 62.8
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 1.2e-151 540.4 413 62.5
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 7.7e-151 537.7 413 62.2
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 2.9e-150 535.8 405 65.2
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 6.5e-150 534.6 409 61.6
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.1e-148 528.1 322 77.3
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 5.2e-147 525.0 412 60.9
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 6.8e-147 524.6 388 66.8
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 4.4e-146 521.9 414 60.4
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 5.7e-146 521.5 414 60.4
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 9.8e-146 520.8 403 64.0
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 2.2e-145 519.6 392 64.5
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 2.2e-145 519.6 400 61.8
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 1.4e-144 516.9 388 63.7
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 2.4e-144 516.2 410 61.0
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 1.7e-142 510.0 410 61.5
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.9e-141 506.5 416 60.3
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 7.3e-141 504.6 416 60.6
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 9.5e-141 504.2 376 64.4
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 9.5e-141 504.2 408 60.0
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.6e-140 503.4 399 61.4
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.0e-139 500.7 376 64.1
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.7e-137 492.3 389 63.8
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 3.7e-137 492.3 335 71.6
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 6.4e-137 491.5 410 58.5
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.1e-136 490.7 393 61.3
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.2e-136 489.2 393 61.3
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 7.0e-136 488.0 418 57.9
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.7e-134 483.4 386 63.0
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 3.0e-134 482.6 393 62.6
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 3.0e-134 482.6 412 58.7
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 8.6e-134 481.1 419 58.2
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.5e-133 480.3 408 60.8
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 3.3e-133 479.2 428 58.9
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 2.8e-132 476.1 409 56.0
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 5.2e-131 471.9 413 56.9
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 1.5e-130 470.3 355 62.3
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.4e-130 468.8 415 58.8
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 4.4e-130 468.8 390 62.3
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 7.5e-130 468.0 408 60.3
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 9.8e-130 467.6 421 59.4
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 1.3e-129 467.2 405 56.0
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 8.3e-129 464.5 417 58.3
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.4e-128 463.8 423 57.7
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 4.1e-128 462.2 420 59.8
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 7.0e-128 461.5 408 60.0
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 7.0e-128 461.5 420 59.8
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.6e-127 460.3 412 61.2
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.0e-127 459.9 408 59.8
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.5e-127 459.1 416 57.9
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 8.6e-126 454.5 355 65.4
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 1.5e-125 453.8 420 57.4
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.5e-125 453.0 391 60.4
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.1e-123 447.6 410 53.9
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.0e-122 443.4 414 54.6
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.4e-122 442.6 414 54.6
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 7.5e-122 441.4 411 53.5
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 2.9e-121 439.5 413 52.5
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 3.7e-121 439.1 316 69.0
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.4e-120 435.3 404 57.4
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 2.1e-116 423.3 402 53.2
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 1.8e-115 420.2 418 50.5
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 7.6e-114 414.8 395 53.2
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.8e-113 412.5 395 52.9
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 2.4e-112 409.8 390 52.3
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 7.1e-112 408.3 390 52.3
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.2e-111 407.5 334 60.2
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.6e-111 407.1 356 55.9
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 3.5e-111 406.0 396 50.0
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 4.6e-111 405.6 396 50.0
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 6.0e-111 405.2 396 50.0
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 6.0e-111 405.2 396 50.0
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 7.8e-111 404.8 390 52.1
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 1.7e-110 403.7 391 55.8
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 2.3e-110 403.3 407 51.6
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.9e-109 400.2 381 50.9
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 2.5e-109 399.8 424 48.8
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 1.1e-107 394.4 399 53.1
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 5.2e-107 392.1 409 46.7
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 4.9e-105 385.6 411 46.2
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 3.2e-104 382.9 292 64.4
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 4.8e-100 369.0 375 49.6
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 6.2e-100 368.6 409 47.4
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 4.0e-99 365.9 409 47.7
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 9.9e-98 361.3 366 51.4
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 3.8e-97 359.4 372 50.3
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 6.4e-97 358.6 421 43.5
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 3.5e-95 352.8 391 46.3
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 5.6e-93 345.5 403 45.2
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.9e-91 338.6 372 44.6
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 1.4e-88 330.9 365 47.4
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.1e-87 327.0 279 60.9
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 2.4e-83 313.5 289 54.0
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 5.3e-83 312.4 408 43.6
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 6.9e-83 312.0 385 44.4
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.2e-81 307.0 414 41.3
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 5.1e-78 295.8 351 46.2
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.4e-72 277.7 295 54.9
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 2.7e-71 273.5 413 38.5
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 2.3e-70 270.4 233 53.6
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.3e-65 254.6 285 46.3
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 1.0e-62 245.0 358 40.2
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 2.6e-58 230.3 178 59.0
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 2.9e-57 226.9 232 51.7
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.4e-54 218.0 243 49.0
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 5.0e-49 199.5 173 59.5
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.0e-46 191.8 177 56.5
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.3e-46 190.7 218 48.6
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 3.0e-46 190.3 127 70.9
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 3.0e-46 190.3 138 66.7
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 5.7e-45 186.0 185 54.1
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.8e-41 173.3 307 35.5
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 8.0e-39 165.6 309 35.9
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 8.8e-38 162.2 135 57.0
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 7.0e-35 152.5 346 33.8
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 2.7e-34 150.6 151 49.7
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 4.2e-32 143.3 114 55.3
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.4e-22 111.7 74 68.9
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 2.3e-22 110.9 62 77.4
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 2.7e-18 97.4 380 26.1
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 3.6e-15 87.0 348 25.9
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.2e-10 72.0 273 27.1
Cre16.g675900 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D145447 5.2e-06 56.6 77 33.8


User provided reference genes

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