Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 6.8e-82 307.4 167 100.0
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 6.0e-78 294.3 167 95.8
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.9e-76 289.3 167 91.6
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 3.6e-75 285.0 167 92.2
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 9.0e-74 280.4 167 90.4
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.4e-71 272.3 167 88.0
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 7.8e-70 267.3 168 87.5
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 1.3e-69 266.5 167 86.2
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.7e-69 266.2 168 83.9
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 3.9e-69 265.0 168 83.9
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 3.9e-69 265.0 167 85.6
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 8.7e-69 263.8 168 84.5
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 1.1e-68 263.5 168 86.3
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 1.1e-68 263.5 167 82.6
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.5e-68 262.3 168 83.9
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 9.6e-68 260.4 169 84.6
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 2.1e-67 259.2 168 85.1
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 3.6e-67 258.5 168 82.1
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 3.6e-67 258.5 161 85.1
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 4.8e-67 258.1 168 84.5
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 8.1e-67 257.3 167 84.4
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 6.9e-66 254.2 167 78.4
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 6.9e-66 254.2 168 83.9
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 9.0e-66 253.8 168 82.7
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 1.5e-65 253.1 169 82.2
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 2.0e-65 252.7 171 81.9
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 3.4e-65 251.9 171 81.3
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 5.8e-65 251.1 169 81.1
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 5.8e-65 251.1 167 80.2
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 9.9e-65 250.4 169 79.3
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 1.7e-64 249.6 169 84.0
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 1.7e-64 249.6 167 78.4
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.2e-64 249.2 169 79.9
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.9e-64 248.1 168 79.8
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.1e-63 246.9 169 79.3
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 1.1e-63 246.9 167 77.8
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 1.9e-63 246.1 167 77.8
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.9e-63 246.1 170 78.2
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 2.4e-63 245.7 169 77.5
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 3.2e-63 245.4 169 78.7
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 4.2e-63 245.0 167 74.9
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 5.4e-63 244.6 169 82.8
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 5.4e-63 244.6 169 76.3
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 2.1e-62 242.7 167 79.0
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 2.7e-62 242.3 169 78.7
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 2.7e-62 242.3 167 73.7
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 2.7e-62 242.3 168 79.2
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 3.5e-62 241.9 163 80.4
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 3.5e-62 241.9 169 77.5
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 6.0e-62 241.1 169 79.9
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 7.9e-62 240.7 167 76.6
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 7.9e-62 240.7 169 76.9
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 7.9e-62 240.7 169 76.9
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 7.9e-62 240.7 168 75.0
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 7.9e-62 240.7 170 78.2
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 1.0e-61 240.4 170 77.6
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.3e-61 239.2 168 76.8
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 2.3e-61 239.2 169 76.9
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 3.9e-61 238.4 167 74.3
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 6.7e-61 237.7 169 77.5
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 7.4e-60 234.2 169 75.7
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 9.6e-60 233.8 168 78.6
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 2.1e-59 232.6 171 78.4
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 2.8e-59 232.3 172 75.0
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 4.8e-59 231.5 167 73.1
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.8e-58 229.6 153 81.0
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 3.1e-58 228.8 170 76.5
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 4.0e-58 228.4 167 73.7
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 6.9e-58 227.6 169 74.0
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 6.9e-58 227.6 164 75.6
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.2e-57 226.9 170 70.6
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 1.5e-57 226.5 167 73.1
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 4.5e-57 224.9 171 71.9
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 5.8e-57 224.6 173 74.0
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 9.9e-57 223.8 162 78.4
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.3e-56 223.4 169 72.2
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.3e-56 223.4 170 74.1
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 2.2e-56 222.6 169 71.6
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 2.2e-56 222.6 168 72.0
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 2.9e-56 222.2 168 69.0
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 3.8e-56 221.9 169 71.0
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 6.4e-56 221.1 168 71.4
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 1.4e-55 219.9 170 72.9
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.4e-55 219.9 169 71.0
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.4e-55 219.2 169 71.6
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 2.4e-55 219.2 169 71.6
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 2.4e-55 219.2 169 71.0
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 2.4e-55 219.2 169 70.4
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 3.2e-55 218.8 169 70.4
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 3.2e-55 218.8 167 71.3
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 3.2e-55 218.8 167 71.3
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 3.2e-55 218.8 167 70.7
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 4.2e-55 218.4 169 69.8
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 4.2e-55 218.4 169 69.8
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 4.2e-55 218.4 167 70.7
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 4.2e-55 218.4 166 68.7
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 7.1e-55 217.6 167 70.7
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 7.1e-55 217.6 169 69.8
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 7.1e-55 217.6 169 69.8
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 7.1e-55 217.6 169 69.8
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 1.2e-54 216.9 168 71.4
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 1.2e-54 216.9 168 69.6
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 1.6e-54 216.5 168 70.8
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 1.6e-54 216.5 168 70.8
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.6e-54 216.5 163 69.3
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 3.5e-54 215.3 169 70.4
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 3.5e-54 215.3 167 70.7
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 7.9e-54 214.2 156 71.8
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 7.9e-54 214.2 170 69.4
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 1.0e-53 213.8 168 67.9
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.3e-53 213.4 172 69.8
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 1.8e-53 213.0 164 70.1
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 2.3e-53 212.6 170 71.2
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 3.9e-53 211.8 170 68.8
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 3.9e-53 211.8 170 68.8
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 3.9e-53 211.8 170 68.8
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 8.7e-53 210.7 165 69.1
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 8.7e-53 210.7 172 67.4
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 8.7e-53 210.7 168 69.6
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.1e-52 210.3 172 66.3
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.1e-52 210.3 171 69.6
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.1e-52 210.3 171 69.6
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 4.3e-52 208.4 168 65.5
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 5.6e-52 208.0 171 67.3
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 5.6e-52 208.0 167 67.1
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 7.4e-52 207.6 146 78.8
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 1.3e-51 206.8 171 66.7
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 1.6e-51 206.5 167 67.7
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 2.1e-51 206.1 170 67.1
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 2.1e-51 206.1 171 66.7
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 2.1e-51 206.1 171 66.7
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 2.1e-51 206.1 171 66.7
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 6.9e-50 201.1 170 67.6
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 9.0e-50 200.7 168 66.1
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 9.0e-50 200.7 172 67.4
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 2.6e-49 199.1 170 66.5
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 4.9e-48 194.9 161 64.0
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 4.9e-48 194.9 169 65.7
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 5.1e-45 184.9 102 86.3
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 9.7e-44 180.6 100 85.0
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.6e-43 179.9 102 83.3
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 7.6e-41 171.0 100 81.0
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 1.9e-39 166.4 168 59.5
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 2.1e-38 162.9 173 56.6
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 1.4e-37 160.2 169 58.0
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 5.1e-37 158.3 168 57.7
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 6.7e-37 157.9 217 48.4
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.7e-35 153.3 141 63.1
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.5e-33 146.7 171 49.7
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 2.2e-32 142.9 175 48.0
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.8e-32 142.1 167 49.1
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 3.8e-32 142.1 176 48.3
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.3e-29 132.9 170 45.3
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 6.7e-29 131.3 178 53.9
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 5.7e-28 128.3 171 49.1
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 9.1e-26 120.9 70 78.6
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 9.1e-26 120.9 146 48.6
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 2.0e-25 119.8 149 47.7
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.5e-25 118.6 70 75.7
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 2.5e-23 112.8 161 45.3
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 5.5e-23 111.7 168 42.9
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-20 103.6 67 73.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.4e-18 97.1 82 62.2
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 1.5e-15 87.0 44 88.6
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 3.1e-10 69.3 69 69.6
TAR628G0544 Trochodendron aralioides HOM05D004247 ORTHO05D004994 8.5e-08 61.2 62 64.5


User provided reference genes

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