Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 0.0e+00 1634.4 890 100.0
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 0.0e+00 1254.6 891 78.7
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 0.0e+00 1249.2 893 78.5
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 0.0e+00 1075.5 804 71.3
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 1.3e-309 1066.2 902 67.3
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 3.0e-309 1065.1 911 67.5
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 3.6e-307 1058.1 914 67.8
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 3.1e-306 1055.0 903 68.0
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 2.2e-296 1022.3 941 64.5
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 4.9e-296 1021.1 936 63.1
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 3.2e-295 1018.5 818 68.1
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 7.9e-294 1013.8 910 62.3
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 1.3e-293 1013.1 928 63.0
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 5.1e-293 1011.1 904 63.7
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.4e-290 1003.0 924 62.3
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 6.9e-290 1000.7 898 63.4
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.6e-289 998.8 882 65.3
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 2.6e-289 998.8 894 62.3
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 4.5e-289 998.0 842 65.7
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 5.5e-287 991.1 918 61.3
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 9.3e-287 990.3 928 61.9
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 2.1e-286 989.2 894 60.5
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.3e-285 986.5 928 61.2
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 1.8e-285 986.1 900 63.7
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 2.8e-283 978.8 897 60.0
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 3.1e-282 975.3 899 62.5
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 5.3e-282 974.5 900 60.7
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.5e-281 973.0 977 61.7
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 2.0e-281 972.6 901 60.6
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 3.4e-281 971.8 896 62.1
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 3.4e-281 971.8 899 60.7
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 4.5e-281 971.5 899 59.8
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 3.8e-280 968.4 896 60.8
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 1.1e-279 966.8 927 59.4
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 3.2e-279 965.3 899 61.6
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 4.2e-279 964.9 916 60.9
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 2.0e-276 956.1 898 61.0
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 2.8e-275 952.2 895 63.2
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 8.2e-275 950.7 899 61.3
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 1.2e-273 946.8 899 59.5
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 5.9e-273 944.5 904 61.9
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 1.7e-272 943.0 909 58.2
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 5.7e-268 927.9 823 63.1
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.6e-265 919.1 898 58.2
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 2.2e-264 916.0 902 58.3
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 1.1e-263 913.7 902 58.5
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.3e-261 906.0 905 58.1
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 2.2e-259 899.4 833 58.6
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 8.2e-259 897.5 939 55.9
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 3.8e-256 888.6 548 93.1
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 8.5e-256 887.5 808 61.0
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 1.8e-253 879.8 945 56.2
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 2.3e-253 879.4 797 61.5
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 8.8e-253 877.5 901 58.8
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 1.3e-251 873.6 952 52.9
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 6.3e-251 871.3 939 57.0
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 4.1e-250 868.6 905 54.3
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 5.4e-250 868.2 904 56.5
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 4.5e-249 865.1 939 56.8
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 8.0e-246 854.4 833 56.9
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 1.8e-245 853.2 834 57.1
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 6.3e-243 844.7 912 56.6
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 8.3e-243 844.3 843 56.3
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 7.0e-242 841.3 903 55.0
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 3.5e-241 839.0 901 55.3
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.7e-240 836.6 894 54.3
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 8.6e-240 834.3 815 56.6
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 1.5e-239 833.6 814 56.5
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 2.5e-239 832.8 909 53.5
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 9.5e-239 830.9 814 56.4
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 1.2e-238 830.5 908 54.2
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 6.1e-238 828.2 832 55.8
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 1.4e-237 827.0 829 55.5
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 1.8e-237 826.6 831 55.5
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 3.0e-237 825.9 824 56.2
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 3.4e-236 822.4 899 51.9
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.7e-235 820.1 905 54.7
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 2.9e-235 819.3 842 57.0
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 6.4e-235 818.1 933 54.3
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 2.0e-233 813.1 782 58.3
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 1.0e-229 800.8 675 69.3
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 1.1e-223 780.8 832 54.0
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 4.7e-222 775.4 822 55.0
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 3.4e-212 742.7 734 55.9
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.2e-211 740.0 891 51.3
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 2.9e-203 713.0 817 51.5
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 4.6e-201 705.7 949 46.0
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 1.3e-198 697.6 705 56.3
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 1.6e-190 670.6 648 58.3
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 9.6e-183 644.8 773 49.5
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 3.7e-182 642.9 825 45.9
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 2.4e-181 640.2 797 47.7
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.1e-175 621.3 753 48.6
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 9.7e-175 618.2 450 71.1
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 2.2e-174 617.1 487 68.0
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 1.1e-165 588.2 589 54.2
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 4.2e-162 576.2 408 71.6
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 1.6e-161 574.3 919 43.4
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 1.0e-155 555.1 910 42.4
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 3.1e-141 506.9 586 52.4
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 7.0e-141 505.8 410 64.9
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 1.7e-107 394.8 219 93.2
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 1.3e-102 378.6 381 57.5
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 4.9e-102 376.7 703 36.0
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 1.0e-91 342.4 222 77.9
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 6.6e-91 339.7 479 44.3
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 1.3e-83 315.5 971 29.9
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 2.4e-80 304.7 689 32.1
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 3.4e-79 300.8 828 30.4
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 1.9e-77 295.0 1081 29.0
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 6.7e-59 233.4 288 48.6
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 4.8e-57 227.3 247 64.0
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 4.8e-57 227.3 150 76.0
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 4.8e-57 227.3 140 88.6
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 2.6e-42 178.3 195 53.8
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 6.5e-38 163.7 219 44.7
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 8.5e-30 136.7 84 83.3
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 2.7e-20 105.1 63 74.6
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 1.2e-18 99.8 104 56.7
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 2.3e-14 85.5 721 23.6
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 5.5e-13 80.9 128 43.0
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 2.6e-10 72.0 45 75.6
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 2.6e-10 72.0 45 75.6
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 4.1e-08 64.7 75 45.3
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 9.2e-08 63.5 99 39.4


User provided reference genes

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